A user interface for interacting with the Gadgetron Framework. We hope it assissts you in your daily work and you are welcome to further enhance the system.
It is implemented with Node.js on the server-side and a backbone on the client-side. There are two operation modes available:
- local: start a local GUI (wrapper around remote option)
- remote: run a server and connect to the server via webbrowser
Assuming you are running it inside the gadgetron docker image or having gadgetron set up properly.
sudo apt-get install npm nodejs-legacy
git clone https://github.com/gadgetron/GadgetronControl
cd GadgetronControl
npm install
npm startPrerequisites are the following tools:
Please set the PATH variables so that the GadgetronControl can find them and install the required packages:
sudo apt-get install npm nodejs-legacy
export GADGETRON_HOME=/usr/local
export ISMRMRD_HOME=/usr/local
export PATH=$PATH:$GADGETRON_HOME/bin:$ISMRMRD_HOME/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$GADGETRON_HOME/lib:$ISMRMRD_HOME/libFor installation and startup you can use the following script.
git clone https://github.com/gadgetron/GadgetronControl
cd GadgetronControl
# install GadgetronControl dependencies
npm installThe GadgetronControl can be configured in the "Settings"-Tab or directly in the "./config.json" file (requires GadgetronControl restart):
"port": "3000", // client-server communication port
"hostname": "localhost", // server IP
"config_dir": "/usr/local/share/gadgetron/config/", // Gadgetron configuration dir (path with *.xml files)
"upload_dir": "uploads", // data upload directory (relative to GadgetronControl root)
"result_dir": "public/results", // results directory (relative to GadgetronControl root)
"trash_dir": "trash", // trash directory (relative to GadgetronControl root)
"gadgetron_port": "9002", // Gadgetron port
"gadgetron_relay_host": "localhost", // Gadgetron relay host
"gadgetron_relay_port": "8002", // Gadgetron relay port
"gadgetron_rest_port": "9080", // Gadgetron rest port
"gadgetron_log": "/tmp/gadgetron.log", // Gadgetron log file
"readers_db": "db/readers.db", // database for reader gadgets (relative to GadgetronControl root)
"gadgets_db": "db/gadgets.db", // database for Gadgetron gadgets (relative to GadgetronControl root)
"writers_db": "db/writers.db", // database for writer gadgets (relative to GadgetronControl root)
"admin_user": "admin", // admin user name
"password": "admin", // admin password
"viewer": "hdfview" // optional viewers: hdfview | imagej
The UI is then started as a standalone GUI:
# start electron GUI
npm startor via webbrowser under http://localhost:3000:
# start remote webserver
npm run remoteWe implemented a small (but insecure) authentification to ensure a user message notification if anything is deleted. Username and password are both admin by default but you are free to change them in the config.json.
- run Gadgetron configurations (.xml), bash scripts (.sh) and python scripts (*.py)
- upload or locate data on server
- configure Gadgetron pipeline: visualize, add, delete, rearrange and parametrize gadgets
- upload/download and locate data on server
- display log output
- view results via hdfview or imagej
The project is ordered in the following folders:
db (place for the databases)
api (APIs from the server side)
node_modules
public (backbone stuff)
+--css
| +--libs (bootstrap, etc.)
| +--... (place for new css files)
+--fonts
| +--... (place for all needed fonts)
+--img
| +--... (place for new images)
+--js
| +--collections (all backbone colections)
| +--models (all backbone models)
| +--routes (all routes)
| +--views (all views)
| backboneMain.js (jump in from backbone)
| gadgetronBundleApp.js (babelified server code)
| regionManager.js (handels multiple views)
+--results (results of gadgetron for direct download)
+--index.html (main page)
+--load.html (loading page)
trash (storage for the garbage)
uploads (storage for your data)
+--dat
+--h5
+--xsl
config.json (configuration variables)
Gruntfile.js (grunt script)
main.js (electron GUI)
index.js (node.js server)
package.json (npm packages)
readme.md (this file ;))
- v1.0.0: initial release
Please read LICENSE file for licensing details.
Further information can be found at:
https://sites.google.com/site/kspaceastronauts/gadgetron/gadgetroncontrol
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