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Only happens in Bash prompt. Zsh prompt (using powerlevel10k) works well.

During Vim startup, the file name and some other file info showed in the cmdline and then disappears, then left a black box in the cmdline (as red arrow points in the snapshot).

This is due to a 'bad pager', as explained in this SO answer. Specifically, some of the less options, -E and -F, cause less to automatically exit, as per less manual:

-E or --QUIT-AT-EOF
Causes less to automatically exit the first time it reaches end-of-file.

-F or --quit-if-one-screen
Causes less to automatically exit if the entire file can be displayed on the
first screen.

fd8115a sets $LESS to FR, causing the problem.

When I reopen Vim frequently in tmux, sometimes the normal mode cursor is the one of insert mode.

As of right now I use xclip to redirect tmux buffer. However, according to https://wiki.archlinux.org/index.php/Tmux#X_clipboard_integration :

Nevertheless, it is neater to use xsel because xclip does not close STDOUT after it has read from the tmux buffer. As such, tmux does not know that the copy task has completed, and continues to wait for xclip to terminate, thereby rendering tmux unresponsive. A workaround is to redirect STDOUT to /dev/null:

# Vim style
bind-key -T copy-mode-vi y send-keys -X copy-pipe-and-cancel "xclip -i -sel clip > /dev/null"
bind-key p run "xclip -o -sel clip | tmux load-buffer - ; tmux paste-buffer"

When I run :CocList extensions:

And when I run :CocInfo, the output opens in another buffer instead of vertical split. Then if I try to move to that buffer by ;bn:

When I SSH into other machine (tried Manjaro and Raspberry Pi OS) with terminfo set to alacritty in local machine (macOS), the directory colours are not displayed and is in black and white, even if I've installed alacritty terminfo on the remote machine.

Specifically, the indent guides show this mistake.

See SirVer/ultisnips#1424.

Also 1d5a54a.

how to uninstall that

Relevant issues: kovidgoyal/kitty#348 and vim-airline/vim-airline#393.

Workaround for now (200ac14):

I'm guessing you've migrated from dotbot to chezmoi, which I'm also doing. I just noticed your windows deployment wiki section still has dotbot as your dotfile deployment manager.

I appreciate how much work you put into documenting all of these config files so other people can use it for reference, it's been very helpful!

This could be reproduced on Linux with xclip installed.
Related issues: neovim/neovim#2642, neovim/neovim#7958 and svermeulen/vim-yoink#16.