Comments (4)
Example: create tuples (parent, child), sort with unique entries, concatenate and hash with md5.
from taxator-tk.
Alternatively, read from file in taxonomy folder and let the versioning be handled externally.
from taxator-tk.
Preliminary external bourne code:
taxonomy_version() { cat "$@" | awk -F '\t' '{if($1 != $3) print $1 "\t" $3}' | LC_COLLATE=C sort -u | md5sum | cut -d ' ' -f 1; }
taxonomy_version nodes.dmp
from taxator-tk.
Close this, because it is done externally. Leaves most freedom to use whatever data and version you like.
from taxator-tk.
Related Issues (20)
- Reduce binary size and create shared library
- taxknife: throw specific error when taxid is not found in taxonomy HOT 3
- taxator: all LCA variant crash with segfault
- binner: remove empty log file
- taxknife: "--set-invalid-annotate" omits empty trailing fields HOT 2
- taxator: incorrect exception message is given when running multi-threaded HOT 8
- alignment format error HOT 2
- bad number of fields in alignment line, but really not HOT 2
- binner segment fault HOT 6
- refpack file HOT 6
- Why two input references? HOT 1
- program version command line argument --version HOT 1
- Missing compiler check for C++11 support HOT 5
- 'boost::exception_detail::clone_impl<FileNotFound>' HOT 5
- output interpretation. How to? HOT 17
- Visualize contig_taxonomy.tab HOT 2
- Compiling failed 1.3.3 HOT 2
- Official download page for pre-packaged binaries is not safe to browse? HOT 2
- Compilation error: Performing C SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD failed HOT 4
- How to install taxator-tk HOT 9
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