fungs Goto Github PK
Name: Johannes Dröge
Type: User
Bio: Bioinformatics, open science, open source, software engineering, infrastructure and cloud IT
Location: Düsseldorf, Germany
Blog: https://science.fungs.de
Johannes Dröge's Projects
bam-readcount
count DNA sequence reads in BAM files
bbx-base
A simple bioboxes base image for Docker
bbx-cli
Command line interface for running bioboxes
biocode
Bioinformatics code libraries and scripts
cami-binning-eval
A biobox for CAMI binning evaluation
centrifuge
Classifier for metagenomic sequences
cyipopt
Cython interface for the interior point optimzer IPOPT
feat-autobahn-python-httpheaders
WebSocket and WAMP in Python for Twisted and asyncio
hands-on-krakend
Demo repository for KrakenD API Gateway showcases and plugins
mglex
MGLEX – A Python Package for Probabilistic Modeling and Binning of Metagenomes
minibar
Progress bar for python
orfm
simple and not slow ORF caller
owntone-server
Linux/FreeBSD DAAP (iTunes) and MPD media server with support for AirPlay 1 and 2 speakers (multiroom), Apple Remote (and compatibles), Chromecast, Spotify and internet radio.
pycogent
PyCogent: Official repository for software and unit tests
rfc
Request for comments on interchangeable bioinformatics containers
samtools-utilities
Hacked Utilities for Samtools
simplenote-electron
A Simplenote React app packaged via Electron for Windows and Linux
stockholm2cigar
Convert Stockholm alignments as output by HMMER to cigar strings
taxator-tk
A set of programs for the taxonomic analysis of genetic sequences
thesis-phd
PhD thesis: Computational Methods for Taxonomic Annotation and Genome Reconstruction in Metagenomics
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