frankligy / neoantigenworkflow Goto Github PK

Here's the guideline:

conda create -p mhcEnv python=3.6
pip install mhcflurry
pip install Biopython matplotlib requests pathos xmltodict
pip install torch torchvision
mhcflurry-downloads fetch models_class1_presentation
# when doing above, properly upgrade or downgrade relevant package if conflicting occur

{'E8.1': False, 'E8.2': False, 'E8.3': True, 'E9.10': True} E9.1 ENSG00000150403 E8.3|E9.1 ENST00000465556
multiprocess.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/data/salomonis2/LabFiles/Frank-Li/python3/mhcPresent.py", line 510, in second_match
judge_query = dict_judge[exam2]
KeyError: 'E9.1'