The repository includes the development version of shiny application ProteinMicroarrayApp

! The app development moved to https://github.com/fpaskali/MADApp !

Our app can be tested on shinyapps.io.

https://lfapp.shinyapps.io/protein_array/

ProteinArrayApp is dependent on following packages

• shiny
• shinyjs
• shinythemes
• fs
• DT
• tidyr
• plotly
• colourpicker
• EBImage

They can be installed via

install.packages(c("shiny","shinyjs","shinythemes","fs","DT","tidyr","plotly","colourpicker"))

Additionaly, the application requires EBImage package which can not be found on CRAN and should be installed from Bioconductor via

## Install package BiocManager
if(!require(BiocManager)) install.packages("BiocManager")
## Use BiocManager to install EBImage
BiocManager::install("EBImage", update = FALSE)

The application can be loaded into RStudio and started with Run App command; or from R with the following commands

library(shiny)
runApp("R/proteinarray_app.R")

Image analysis (cropping, segmetation, thresholding, feature engineering, plotting, timeseries) of images taken from protein microarrays.