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hpc_guide's Introduction

HPC for the practical person

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This tiny tutorial is for users getting started to cluster computer

Content {#content}

  1. Slurm
  2. GRIDUNESP
  3. NERSC

Slurm {#slurm}

Slurm is a popular job manager system. Below, I list some of basic commands to use in your terminal1

  1. Submit your job:
sbatch <my_submition_file.some_extension>
  1. Check your job status:
squeue -u <my_username>

or, literally,

squeue -u $USER

where the system understand $USER as your username.

  1. cancel your job
scancel -j <my_jobid> 

(1)In linux, press ctrl+alt+t


Using GRIDUNESP {#gridunesp}

GRIDUNESP is the UNESP HPC system.

check:

  1. environments
  2. modules , avail, load,
  3. renomear uma biblioteca
  4. NUNCA MEXER NO .bashrc
  5. .bashrc_profile
  6. likelihood cobaya
  1. Acessing it
ssh <my_username>@access2.grid.unesp.br

note: avoid to login in access.grid.unesp.br

  1. Basic Structure:

$HOME

$STORE

Running jobs in GRIDUNESP:


Using NERSC {#nersc}

Accessing CORI/NERSC through ssh. Be aware that it is a 2 factor authentication.

ssh <my_username>@cori.nersc.gov

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