fbaumdicker's Projects
manuscript materials for the adding species paper
AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.
A textbook on population genetics
Source for The Good Research Code Handbook
LaTeX template for ERC proposals
Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships
Lecture Notes on Computational and Mathematical Population Genetics
A reimplementation of Hudson's classical ms simulator for modern data sets.
Publication describing msprime 1.0
Processing pipeline for pan-genome visulization and exploration
panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.
This repository implements Phylogenetic Trees in Python
A tutorial on making phylogenetic trees in python
Material for SMBE-SGE-2019 workshop
ancestral reconstruction and likelihood analysis for CRISPR spacer arrays
A library of standard simulation models for msprime