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t2tools

T2Tools is a tool contains several tools for T2T assembly, and it is under development.

tgg

tomato graph pangenome

tomatosuperpangenome

Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon

to_etal_2022_natcom

tutorial_pan_genomics

Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial presents an example using two haplotypes of the optix locus in Heliconius butterflies.

uncovering-the-trn-involved-in-boosting-wheat-regeneration-and-transformation

Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".

vegetablegenomicsbreeding

Recent advancements of vegetable genomics and how omics information has empowered biology studies and molecular breeding

watermelon-pangenome

wgsc

work_flow_of_population_genetics

整理常用的群体遗传学分析流程和脚本

xzg-myscripts