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crossspeciesexonanalysis's Introduction

CrossSpeciesExonAnalysis

Code and data to accompany

./data/ Contains the following raw data:

  1. GFF3 files downloaded from Ensembl FTP (links here http://www.ensembl.org/info/data/ftp/index.html/) NB: files for mouse and human are too large so are not included here
  2. Extra UTR regions for S.cerevisiae downloaded from https://github.com/ewallace/yeastutrgff
  3. Whole exome sequencing capture regions for the UK Biobank capture downloaded from https://biobank.ndph.ox.ac.uk/ukb/refer.cgi?id=3803

./code/ Contains code for two analyses:

  1. Assessing the proportion of exonic bases with different annotations
  2. Assessing the overlap of human exonic bases with whole exome sequencing capture regions

crossspeciesexonanalysis's People

Contributors

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