Comments (1)
nghiavtr
commented on June 24, 2024
1
Dear @seongguheo,
Thank you for your interesting in our isoform quantification tool.
Scasa is designed for prime-biased single-cell RNA-seq data. For the full-length Smart-seq2, you can use another tool from our group, XAEM (https://www.meb.ki.se/sites/biostatwiki/xaem/) that it has demonstrated well performance for both bulk RNA-seq and full-length Smart-seq2 data in its publication (https://academic.oup.com/bioinformatics/article/36/3/805/5545974)
Drop me a line if you have any issues with either Scasa or XAEM.
Best,
Nghia
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Related Issues (12)
- mkdir errors HOT 3
- Using your tool for single cell data barcoded with split-seq technology and not droplet based HOT 1
- fail in docker: Total 0 white-listed Barcodes HOT 9
- 。
- Quantification Fails HOT 3
- QOL change: reset command line color changed by die commands in perl script
- Symlink to binary not supported but no error provided
- Alevin Failed HOT 10
- Scasa:v1.0.1 docker shows error HOT 3
- no mapped reads in test on SRA sample HOT 1
- So many Error messages: please help HOT 13
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