erjel Goto Github PK

ncut9

Normalized cut from http://www.cis.upenn.edu/~jshi/software/ with small modifications. Tested with Matlab 2016.

ortega_master_thesis

Repository containing code for my master's thesis

real-sr

Real-World Super-Resolution via Kernel Estimation and Noise Injection

replicate_graphcut_segmentation

Work in progress

scikit-image

Image processing in Python

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

simclr

SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake_utils

Useful functions for snakemake workflows

sotr

SOTR: Segmenting Objects with Transformers

ssi-code

Denoise and Deconvolve Paper

stardist

StarDist - Object Detection with Star-convex Shapes

stego

Unsupervised Semantic Segmentation by Distilling Feature Correspondences

svf

syconn

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

teaching-dl-course-2019

EMBL Deep Learning course 2019 exercises and materials

tgmm-docker

Automated DockerHub builds for the TGMM (Tracking with Gaussian Mixture Models) software developed in the Keller lab.

watershed.jl

Julia version of watershed.

waterz

Simple watershed and agglomeration library for affinity graphs.

webknossos

webknossos python library from the scalable minds mono-repo

webknossos-1

Visualize, share and annotate your large 3D images online

zettelkasten

Zettelkasten-Developer-Builds

zettelkasten-manual