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GmtPy - A Python interface to GMT

Home Page: http://emolch.github.com/gmtpy

License: Other

Python 87.14% Shell 0.19% Perl 12.67%

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gmtpy's Issues

failing for GMT5.1.1

Hi,
I can get to gmt=GMT() happily when using GMT version 4.5.5 , but it fails for GMT version 5.1.1 with the following :

Traceback (most recent call last):
File "test1.py", line 29, in
gmt = GMT()
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 2850, in init
self.installation = get_gmt_installation(version)
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 1161, in get_gmt_installation
setup_gmt_installations()
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 1045, in setup_gmt_installations
gmtversion, gmthome, gmtbin = check_detect_gmt_installation()
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 976, in check_detect_gmt_installation
return detect_gmt_installation()
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 963, in detect_gmt_installation
gmtversion = get_gmt_version(pjoin(gmtbin, 'gmtdefaults'), gmthome)
File "/sp/prj/tvz95/mypython2/lib/python2.7/site-packages/gmtpy.py", line 946, in get_gmt_version
gmtdefaultsbinary)
Exception: Can't extract version number from output of /opt/local/gmt/GMT5.1.1/bin/gmtdefaults

any suggestions ?

Perhaps the top of "gmtdefaults" under GMT 5.1.1 is different to previous earlier GMT v4 ??

A command-line ">gmtdefaults" (using v5.1.1) results in :

GMT 5.1.1 Defaults file

vim:sw=8:ts=8:sts=8

$Revision: 12822 $

$LastChangedDate: 2014-02-01 00:39:56 +0100 (Sat, 01 Feb 2014) $

how to read grdfile with command 'gmt.grdimage'

I tried to plot some maps with gmt.grdimage, here is my command:
gmt.grdimage(C='cpt', J='m125/35/1:35000000', R='103/153/10/50', B=15, V=True, P=True, in_filename = '/Volumes/work/data/abc.nc')

while it throws an error: "grdimage: Your grid y's or latitudes appear to be outside the map region and will be skipped."

This command works well in bash. I don't quite understand, is the command wrong?
Thanks :-)

Issue whith grdreformat

When I try to use gmtpy with grdreformat, a -K option is add and according to the official documentation of GMT 5.1 this option does not exist. Is it a bad use from me of your module?

Here's my code:
gmt = GMT()
gmt.surface(T=0.25, G="toto.nc", I="0.25m", C=0.1, R="55/56/-21.5/-20.75", in_columns=(xx, yy, zz), out_discard=True)
gmt.grdreformat("toto.nc", "toto.tiff", V="d")

best regards,

Simon

Make it work when GMTHOME variable is not set.

Example 5 fails when using GMT 5.4.5

This is the traceback:

vic@onyx:/mnt/vic/Documents/Coding/GitHub/python-gmtpy$ python examples/example5.py
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter TIME_LANGUAGE is deprecated. Use GMT_LANGUAGE instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
gmt: Warning: Parameter PAGE_COLOR is deprecated. Use PS_PAGE_COLOR instead.
Please see http://gmt.soest.hawaii.edu/doc/5.4.5/GMT_Docs.html#new-features-in-gmt-5 for more information.
Traceback (most recent call last):
  File "examples/example5.py", line 95, in <module>
    gmtpy.nice_palette( gmt, palette_widget, guru, cptfile )
  File "/mnt/vic/Documents/Coding/GitHub/python-gmtpy/gmtpy.py", line 4204, in nice_palette
    label_font = gmt.label_font()
  File "/mnt/vic/Documents/Coding/GitHub/python-gmtpy/gmtpy.py", line 3248, in label_font
    return font_tab_rev(self.gmt_config['FONT_LABEL'].split(',')[1])
TypeError: 'dict' object is not callable

Apart from the deprecation warnings which are caused by not having a specific defaults string for this GMT version, the error of this issue appears because font_tab_rev is defined in the library as a dict object but later the library tries to access an item of this dict using parentheses instead of brackets.

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