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ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

data-studios-datasources

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

go-with-the-flow

hello

Classic hello world script in Nextflow language

nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

nf-gwas

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

nf-test-scripts

Minimal, reproducible examples for testing of NF and/or Tower bugs

proteinfold

Protein 3D structure prediction pipeline

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-nf

A proof of concept of RNAseq pipeline

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

seqera-platform-tools

Set of scripts to interact with Seqera Platform

showcase

Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud

test-datasets

Test data to be used for automated testing with the nf-core pipelines

training

Nextflow training material

tw-e2e-poc

POC for automating Tower setup and pipeline launching through the CLI with GCP as a use-case

tw-pywrap

Python implementation for automated pipeline launching through Tower CLI

tw-pywrap-ci

Run e2e tw-pywrap implementation via CI

wf-human-variation