edraizen / hsp_tiler Goto Github PK
View Code? Open in Web Editor NEWA python script to mend frameshift mutions from blast annotation
License: BSD 3-Clause "New" or "Revised" License
A python script to mend frameshift mutions from blast annotation
License: BSD 3-Clause "New" or "Revised" License
Seems to run out of memory with >40,000 contigs. I'm intending on splitting the contig file and the xml file into smaller chunks and running them separately then catting the output for now.
Using _ as the symbol for a stop codon in the corrected protein output confuses downstream processing in e.g. BLAST as it doesn't recognize the symbol. Suggest changing to * which is widely understood.
Feature request
Very short protein sequences will cause BLAST to crash when you try to annotate them. To prevent this there could be a minimum protein sequence length set by the user.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.