Liz Cooper's Projects
Scripts and Instructions for the analyses in "A Genomic Resource for the Development, Improvement, and Exploitation of Sorghum for Bioenergy"
Data and scripts for Week 12 in class exercises
Scripts and Data for GEN-8900 class on 11-28-2017
A set of Python scripts for running migration models in dadi
Code to generate projects page
Scripts and Instructions from "Genomic variation at the tips of the adaptive radiation of Darwin's finches"
A collection of Perl scripts to convert between various DNA sequencing and SNP data formats.
Pipeline Instructions, Protocols, and Scripts used in "Genomics of Divergence-with-gene-flow in an Island Bird"
Instructions and helpful R code for Running GEMMA and GAPIT
A set of Perl scripts to perform various functions with HapMap format SNP files
Various molecular lab protocols for DNA sequencing and library construction
A few simple scripts to calculate and plot LD using functions from the R genetics package
User prologue and epilogue scripts for torque-based clusters
Files and Instructions associated with Monarcha pigmentation gene manuscript
Methods and Scripts for 2 QTL papers on Mapping Grain Quality Traits in Sorghum
Bioinformatics Pipeline for dRADseq Data
R scripts for finding and plotting recombination breakpoints in a RIL population
Scripts and command lines used in the Rio comparative genomics and transcriptomics project
Scripts and instructions for processing Sanger (ABI) sequence files
A collection of scripts, command lines, and instructions for the analyses performed in "Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm"
R package for analysing site frequency spectra (SFS)
Perl scripts for the analysis of dRAD SNP data
A one column Bootstrap HTML portfolio template - created by Start Bootstrap