durenzn / peca Goto Github PK

Hi, Thanks for your interesting pipeline. I was able to successfully run PECA.sh to create individual networks, but I get an error when trying to compare groups of networks with PECA_compare_dif_multiple.sh (see below). Please let me know how to resolve this. Thanks for your help!

$ sh PECA_compare_dif_multiple.sh Ctrl KO mouse


                                        < M A T L A B (R) >
                              Copyright 1984-2018 The MathWorks, Inc.
                               R2018a (9.4.0.813654) 64-bit (glnxa64)
                                         February 23, 2018

 
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
 
Brace indexing is not supported for variables of this type.

Error in PECA_dif_net_multiple (line 4)
	Node1_1{1,grp}=importdata(['../',Group1{grp,1},'/TFName.txt']);
 
>> exit
cat: *_specific_network.txt: No such file or directory
cat: *_specific_module.txt: No such file or directory

My Ctrl and KO files defining the groups are as follows:

$ cat KO 
6
7
8
9
10

$ cat Ctrl 
11
12
13
14
15

Hi there,

I've been exploring a bunch of repositories that either contain the PECA software or have PECA as a major dependency. I've found these repos across a few accounts:

1. PECA by SUwonglab
2. PECA by durenzn
3. PECA-1 by durenzn
4. TimeReg by SUwonglab
5. vPECA by AMSSwanglab

I've previously submitted issues on the SUwonglab/PECA issue tracker and made an attempt to get in touch with @durenzn directly, both via "@" and by email. Unfortunately, those issues are still awaiting responses.

To get a better picture of the current state of PECA and cast a wide net, I'm posting this identical issue across all these repositories. Is PECA archived, or is it still under development or maintenance? If it's still being developed or maintained, where's that mainly happening?

Any information or guidance would be super helpful. Thanks!