duolinwang Goto Github PK

acm-bcb-2019-tutorial

Slides, code, and examples for the Low-dimensional Representation of Biological Sequence Data tutorial at the ACM-BCB 2019 conference

adversarial-autoencoder

Chainer implementation of adversarial autoencoder (AAE)

adversarialnetspapers

The classical papers and codes about generative adversarial nets

anticrispr

august-2019-consensus-accuracy-update

A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

basecalling-comparison

A comparison of different Oxford Nanopore basecallers

bayesianoptimization

A Python implementation of global optimization with gaussian processes.

bert

TensorFlow code and pre-trained models for BERT

bfdca

BFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis

bhtsne

Barnes-Hut t-SNE

blog-doc2vec

Code accompanying blog posts about doc2vec

capsnet-keras

A Keras implementation of CapsNet in NIPS2017 paper "Dynamic Routing Between Capsules". Now test error ＝ 0.34%.

capsnet_ptm

CapsNet for Protein Post-translational Modification site prediction.

chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

chiron

A basecaller for Oxford Nanopore Technologies' sequencers

circrnafisher

A systematic computational approach for de novo circular RNA identification

cnnpeaks

A ChIP-Seq peak calling algorithm using convolution neural network

ddpg-keras-torcs

Using Keras and Deep Deterministic Policy Gradient to play TORCS

dec-keras

Keras implementation for Deep Embedding Clustering (DEC)

deep-learning-models

Keras code and weights files for popular deep learning models.

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepdom

DeepDom is an ab-initio method for protein domain boundary prediction

densenet-keras

DenseNet Implementation in Keras with ImageNet Pretrained Models

depict

dm3loc

A novel Deep-learning Framework with Multi-head Self-attention for Multi-label mRNA Subcellular Localization Prediction and Analyses

docker_intro

docker intro for digbio

dragonfly

An open source python library for scalable Bayesian optimisation.

evolocity

Evolutionary velocity with protein language models

expecto

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit