This project forked from rizkg/kmerinshort
short kmer counter
License: GNU Affero General Public License v3.0
KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline from V.Wucher, F.Legai and T.Derrien, a pipeline to annotate long non-coding RNAs.
To retrieve KmerInShort and its submodule (gatb-core), type
git clone --recursive https://github.com/rizkg/KmerInShort
Then build the tool with
mkdir build; cd build; cmake ..; make -j 8
Guillaume Rizk [email protected]
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