druvus Goto Github PK

in_place-feedstock

A conda-smithy repository for in_place.

kraken2_confidence_recal

A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimizer hit groups.

krakenhll

KrakenHLL metagenomics classification method with unique k-mer counting for more specific results

londoncalling2016

Supplementary information for London Calling 2016

ls-bsr

Large scale Blast Score Ratio (BSR) analysis

mauve_snapshot

metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

methylkit

R package for DNA methylation analysis

nanoclust

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

nanopolish

Signal-level algorithms for MinION data

nanopore-doe

Code to optimize assembly and scaffolding using nanopore reads

nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

nanostat

Create statistic summary of an Oxford Nanopore read dataset

nanosv

SV caller for nanopore data

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

ncbimeta

Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).

nlopt-feedstock

A conda-smithy repository for nlopt.

nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

openlabbook

pangolin

Resources for a lineage naming scheme for SARS-CoV-2/hCoV-2019

picopore

A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information

pogenom

Population genomics from metagenomes

project-milk

Metagenomics using snakemake

pydoe2-feedstock

A conda-smithy repository for pydoe2.

r-ape-feedstock

A conda-smithy repository for r-ape.

rat-gut

recycler

This is the codebase for Recycler, the new tool described in our manuscript: http://www.biorxiv.org/content/early/2015/10/26/029926

roprofile

Generation of pan-genome profile files using Roary output.

sacra

SACRA (Split Amplified Chimeric Read Algorithm) is the algorithm for correcting chimeric long-reads generated by MDA.

samclip

Filter SAM file for soft and hard clipped alignments