Git Product home page Git Product logo

plingo's Introduction

Plingo

A system for probabilistic reasoning in clingo.

The system is based on LP^MLN, and provides front-ends for different probabilistic logic languages:

While the basic syntax of plingo is the same as the one of clingo, its semantics relies on re-interpreting the cost of a stable model at priority level 0 as a measure of its probability.

Solving exploits the relation between most probable stable models and optimal stable models [4]; it relies on clingo's optimization and enumeration modes, as well as an approximation method based on answer set enumeration in the order of optimality [5].

The plingo system can be used to solve two reasoning tasks:

  • MAP inference: find a most probable stable model
  • Marginal inference: find all stable models and their probabilities

A number of examples can be found here. There are also sub-directories containing examples using our front-ends for the other probabilistic logic languages.

Installation

With coda

conda install -c potassco plingo

With pip

pip install plingo

From source

git clone https://github.com/potassco/plingo.git
cd plingo
pip install .

Usage

plingo is an extension of clingo, therefore it counts with all of clingo's functionality with new options.

Run the following command and look at plingo's latest options under Plingo Options:

plingo -h

Command line options

  • --all

    Enumerates all stable models and prints their probabilities.

  • --evid=file

    Provides an evidence file to the program (.lp file with clingo syntax rules)

  • --frontend=mode

    Specifies which frontend to use (lpmln, lpmln-alt, problog, plog). Mode lpmln-alt is the alternative definition where hard rules have to be satisfied. When using mode lpmln hard rules are also translated which can be useful for debugging or resolving inconsistencies in the program.

  • --query='atom'

    Adds a query atom atom, e.g. using the example from above --query='bird(jo)'. The argument has to be inside single quotation marks (otherwise the command-line might not be able to parse it correctly).

  • --two-solve-calls

    Uses two solve calls: The first one finds the minimal bound for weak constraints priorities higher than 0. The second one solves for probabilistic stable models of LP^MLN.

  • --unsat

    Uses the conversion with unsat atoms

Examples

MAP estimate

Find a most probable stable model

plingo examples/lpmln/birds.plp --frontend lpmln-alt
plingo version 1.0.0
Reading from examples/birds.lp
Solving...
Answer: 1

Optimization: 300000
Answer: 2
residentBird(jo) bird(jo)
Optimization: 100000
OPTIMUM FOUND

Models       : 2
  Optimum    : yes
Optimization : 100000
Calls        : 1
Time         : 0.005s (Solving: 0.00s 1st Model: 0.00s Unsat: 0.00s)
CPU Time     : 0.005s
Marginal probabilities

To list all stable models, add the flag --all.

plingo examples/lpmln/birds.plp --all --frontend lpmln-alt
plingo version 1.0.0
Reading from examples/birds.lp
Solving...
Answer: 1

Optimization: 300000
Answer: 2
residentBird(jo) bird(jo)
Optimization: 100000
Answer: 3
migratoryBird(jo) bird(jo)
Optimization: 200000


Probability of Answer 1: 0.09003
Probability of Answer 2: 0.66524
Probability of Answer 3: 0.24473


OPTIMUM FOUND

Models       : 3
  Optimum    : yes
Calls        : 1
Time         : 0.006s (Solving: 0.00s 1st Model: 0.00s Unsat: 0.00s)
CPU Time     : 0.006s

Approximation algorithm

For large problems it is infeasible to determine all stable models. Plingo offers an option to determine approximate probabilities using answer set enumeration by optimality (ASEO) [1].

For approximation of probabilistic queries it is recommended to use the --opt-enum option together with --balanced=N.

  • --opt-enum

    Enumerates stable models by optimality. This can be used for approximating probabilities and queries. Recommended to use along with -q1 to suppress printing of intermediate models

  • --balanced=N

    Approximates a query in a balanced way, i.e. it will determine N stable models containing the query, and N stable models not containing the query. This overwrites clingo's --models option. Works only for a single ground query atom!

  • --use-backend

    Adds constraints for query approximation in backend instead of using assumptions.

Input Language

Syntactically, LPMLN differs between "soft" rules and "hard" rules, where "soft" rules have a (real number) weight and "hard" rules the weight "alpha".

Weights can be added by the theory atom &weight/1 to the body of a rule. The argument has to be an integer or a string containing a float or an expression like 2/3. For example

a(X) :- b(X), &weight(5).
b(X) :- &weight("-2/3").

Further it is possible to use the theory atoms &log/1 or &problog/1 which only accept strings as arguments. The atom &log/1 uses the natural logarithm log(p) of its argument p as weight. The atom &problog/1 uses the natural logarithm of p/(1-p) as its weight. Rules that do not have any weight in the body are assumed to be hard rules.

To compute LPMLN programs, a rule in an LPMLN program is converted to ASP with weak constraints

By default, only soft rules are converted. To convert hard rules as well, the --hr flag can be added on the command line. This option essentially makes hard rules optional, whereas in the default setting all hard rules have to be satisfied as usually in ASP.

References

[1] J. Lee and Y. Wang. (2016). Weighted Rules under the Stable Model Semantics

[2] C. Baral and M. Gelfond and J.N. Rushton. (2009), Probabilistic Reasoning with Answer Sets

[3] L. De Raedt and A. Kimmig and H. Toivonen ProbLog: A Probabilistic Prolog and its Applications in Link Discovery

[4] J. Lee and Z. Yang (2017). LPMLN, Weak Constraints and P-log

[5] J. Pajunen and T. Janhunen. (2021). Solution Enumeration by Optimality in Answer Set Programming. Theory and Practice of Logic Programming, 21(6), 750-767.

plingo's People

Contributors

susuhahnml avatar nrueh avatar domoritz avatar rkaminsk avatar

Watchers

 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.