- DQN as a model of synaptic turnover
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TwoPhoton π¬ - python API for analysis of suite2P outputs.
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LinReg - Toolkit containing R and SAS functions/scripts for generalized linear mixed models, linear mixed models, linear models. Contains functions for plotting.
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DeepLabCut based pipelines - Scripts for analyzing outputs of DeepLabCut, a pose-estimation software.
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TMT_BEHAVIOR - Pipeline for simultaneous collection of raspberry-pi camera data.
- An inexpensive recording system for recording video data simultaneously across many hours
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pMAT (forked into my repo "photometry"). - A guided user interface for analysis of fiber photometry data.
- Please see pMAT for our original code
- My repo "photometry" is forked from pMAT and is meant to be run in cloud via SLURM.
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cuda_gpu_tools π¬ - A few scripts for monitoring gpu usage.
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Tension Reader πΆ - Python script for recording tension data for dogs via pi zero device.
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Signal Processing of Brainwave data (aka Calcium Fiber photometry)
- pMAT
- VTA glutamatergic neurons mediate innate defensive behaviors
- Distinct Signaling by Ventral Tegmental Area Glutamate, GABA, and Combinatorial Glutamate-GABA Neurons in Motivated Behavior
- Regulation of social interaction in mice by a frontostriatal circuit modulated by established hierarchical relationships
- A stress-sensitive frontostriatal circuit supporting effortful reward-seeking behavior
- Lateral preoptic area glutamate neurons relay nociceptive information to the ventral tegmental area
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Analysis of single-unit neuronal recording data (in vivo electrophysiology & in vivo two-photon imaging)
- Aversion or salience signaling by ventral tegmental area glutamate neurons
- Acquired Alterations in Nucleus Accumbens Responsiveness to a Cocaine-Paired Discriminative Stimulus Preceding Ratsβ Daily Cocaine Consumption
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Analysis of behavior
- Emergence of negative affect as motivation for drug taking in rats chronically self-administering cocaine