Comments (3)
martvanrijthoven
commented on June 14, 2024
Dear Michel Botros,
Yes, this feature is already implemented. You can add it to your user config e.g.,:
wholeslidedata:
default:
associations:
exact_match: True
Please let me know if you still encounter problems or have any other questions.
Best wishes,
Mart
from pathology-whole-slide-data.
michelbotros
commented on June 14, 2024
Dear Mart,
Oh that's great. Thank you! I'll let you know if I have more questions. So far I like working with this framework :)
Best,
Michel
from pathology-whole-slide-data.
martvanrijthoven
commented on June 14, 2024
Dear Michel,
Really great to hear that you are liking the framework, thank you!
Best wishes,
Mart
from pathology-whole-slide-data.
Related Issues (20)
- write docs HOT 1
- changing image backend to pyvips HOT 4
- Extracting randomly rotated patches from the WSI. HOT 4
- Sliding window with Segmentation Mask Sampling HOT 9
- read images and annotation directly from s3 bucket HOT 9
- Iterating over classes in WholeSlideAnnotation objects HOT 2
- Tissue masking HOT 7
- plot_annotations plots everything flipped HOT 1
- AsapAnnotationParser label colors from group HOT 1
- Sliding Window configuration HOT 6
- Strict sampling with `point_sampler` fails when using data with different level 0 spacings HOT 2
- I got confused between branch 'main' and '0.0.16' HOT 1
- Installing package on local machine HOT 3
- Advantage of ConcurrentBuffer against standard pytorch data loader HOT 2
- create_batch_iterator fails when copy_path != None and number_of_batches > 0 HOT 2
- from wholeslidedata.source.configuration.config import insert_paths_into_config HOT 2
- QuPath annotations (.geojson) format not readable by parser HOT 1
- Implement annotation offset for offset bounds in mrxs files HOT 1
- Patch label sampler fails with point annotation HOT 3
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