Comments (1)
Dear BestVincent,
Thank you for this issue report. Currently, wholeslidedata is transitioning to 0.1.0 (main branch), and indeed there were some incompatible issues with HookNetPracticalGuide.ipynb. I have fixed this now and the notebook should work again if you install wholeslidedata from the main branch:
pip install git+https://github.com/DIAGNijmegen/pathology-whole-slide-data@main
Sorry for the inconvenience. Please let me know if you run into more issues.
Best wishes,
Mart
from pathology-whole-slide-data.
Related Issues (20)
- Iterating over classes in WholeSlideAnnotation objects HOT 2
- Tissue masking HOT 7
- plot_annotations plots everything flipped HOT 1
- AsapAnnotationParser label colors from group HOT 1
- Sliding Window configuration HOT 6
- Strict sampling with `point_sampler` fails when using data with different level 0 spacings HOT 2
- Installing package on local machine HOT 3
- Advantage of ConcurrentBuffer against standard pytorch data loader HOT 2
- create_batch_iterator fails when copy_path != None and number_of_batches > 0 HOT 2
- from wholeslidedata.source.configuration.config import insert_paths_into_config HOT 2
- QuPath annotations (.geojson) format not readable by parser HOT 1
- Implement annotation offset for offset bounds in mrxs files HOT 1
- Patch label sampler fails with point annotation HOT 3
- Support qptiff? HOT 4
- mask to xml/json overhaul HOT 1
- KeyError: 'classification' in qupath annotation parser HOT 1
- add conda recipe HOT 5
- Cucim backend not available
- cuCIM backend not fully supported HOT 1
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from pathology-whole-slide-data.