Intro to R for research scientists.

The repo is designed so that can it be run locally or loaded into R Cloud Studio.

An R Cloud Studio Project loaded from this repository can be found at: https://rstudio.cloud/project/3875044.

• AMvsEM_deseq2_results.csv
  • Adult vs embryonic mouse brain deseq data
  • Read in and used to visualize data
• Intro_R.Rmd
  • An R Markdown file with introduction to R
  • Uses survival package pbc data and mouse brain sequence data
• README.md
  • This README file
• R_Iris_Examples.Rmd
  • Additional R examples using built-in Iris dataset
  • Reviews data visualizations and runs a decision tree in R
• project.Rproj
  • R project file for loading relevant files into an R workspace
• scRNA_RIntro_Apr2022.pptx
  • Powerpoint presentation to accompany this material
• scRNA_RIntro_Apr2022.pdf
  • PDF version of Powerpoint presentation to accompany this material (can be viewed in GitHub)

• Go to RStudio.cloud
• Sign in
• Select New Project
• Select New Project from Git Repository
• Paste the following url: https://github.com/dlumian/R_Intro_scRNA
• Let R Cloud Studio load and deploy project
• Select Intro_R.Rmd file from bottom right pane
• Install required packages (Should pop up option at top of script)
• Follow tutorial by running each code chunk in succession
• For additional examples, open R_Iris_Examples.Rmd and run cell chunks