How to prepare the inputs for training segmentation model? about deeppocket HOT 2 CLOSED

you can check the files we used in our .types files. I believe the cavity6.mol2 files is what we used for training the segmentation model

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Hello @stgzr have you re-run data preparation for a custom data? If yes, please help me.

I am trying to use the instruction to prepare data for training a new classifier.
I have stuck in make_types step because I can't find train.txt and test.txt files.

Moreover, I have 4 questions:

1. If I want to add several pdb files to the available scPDB dataset, how can I complete it?
2. The instruction for preparing data only works for a single pdb file, does it? If not, I need to write a pipeline to wrap up it.
3. How to prepare train.txt and test.txt files to run make_types.py?
4. Could you please show me which file/folder needed inputting from previous to each step?

I am tried on this pdb.

Thank you very much.

p.s: I have asked in the issue #26.

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