segmentation fault about deeppocket HOT 4 CLOSED

Hey,

Could you share the PDB file to reproduce the error

from deeppocket.

OK，I used 1ALB_A in RCSB PDB, but I couldn't upload this pdb file in github issu, so upload the txt file instead
1alb_A.txt

from deeppocket.

Hey sorry, it was a busy week. However, I am not able to reproduce the error, my best guess is that your environment may not be set for it. If you just want the output files on this protein I have uploaded them here: https://drive.google.com/drive/folders/1G8-0Apxn7NEs7pnV0FPvUmQzY4s0vF4h?usp=sharing

from deeppocket.

Hello @WangLiguo-DP have you re-run data preparation for a custom data? If yes, please help me.

I am trying to use the instruction to prepare data for training a new classifier.
I have stuck in make_types step because I can't find train.txt and test.txt files.

Moreover, I have 4 questions:

1. If I want to add several pdb files to the available scPDB dataset, how can I complete it?
2. The instruction for preparing data only works for a single pdb file, does it? If not, I need to write a pipeline to wrap up it.
3. How to prepare train.txt and test.txt files to run make_types.py?
4. Could you please show me which file/folder needed inputting from previous to each step?

I am tried on this pdb.

Thank you very much.

p.s: I have asked in the issue #26.

from deeppocket.