Consolidation of MRI Databases (AWESOME MRI! -- for google)
Welcome to the mripy wiki!
- Openmri.github.io/ocra
- https://github.com/opencore Opencore nmr
- https://github.com/mtwieg/NMR/commits?author=mtwieg Mtwieg github.com
- http://od1n.sourceforge.net/ medusa Stanford
- http://www.opensourceimaging.org/project/gr-mri-a-software-package-for-magnetic-resonance-imaging-using-software-defined-radios/
- https://imr-framework.github.io/ (Pulseq) OCRA
- https://spinsights.chem.agilent.com/login.jspa?referer=%252Findex.jspa
- https://collaborate.mr.gehealthcare.com/
- https://www.mr-idea.com/
- https://www.bruker.com/service/information-communication/nmr-pulse-program-lib/bruker-user-library.html
- https://scion.duhs.duke.edu/vespa/gamma
- https://github.com/chenkonturek/MRS_MRI_libs
- https://github.com/openmrslab/suspect
- https://github.com/SIVICLab/sivic
- https://github.com/cni/MRS
- https://github.com/jjhelmus/nmrglue
- https://github.com/LarsonLab/hyperpolarized-mri-toolbox
- http://hugadams.github.io/scikit-spectra/
- https://github.com/ekgibbons/slr/blob/master/python/slr.py
- https://github.com/LarsonLab/Spectral-Spatial-RF-Pulse-Design
- https://scion.duhs.duke.edu/vespa/
- https://github.com/bretglun/BlochBuster
- https://github.com/leoliuf/MRiLab
- https://github.com/neji49/bloch-simulator-python
- https://github.com/k7hoven/blochsimu
- https://github.com/mriesch-tum/mbsolve
- https://pypi.org/project/blochsimu/
- http://qutip.org/download.html
- http://www.drcmr.dk/bloch
- https://github.com/jtamir/mri-sim-py/blob/master/epg/epg.py
- https://github.com/pulseq/pulseq
- https://github.com/magland/sequencetree5
- https://pulseq.github.io/
- https://toppemri.github.io/
- http://www.jemris.org/ug_command_line.html
- https://github.com/wgrissom/ISMRM-RF-Pulse-Design-Challenge
- https://github.com/tesch1/BruKitchen
- https://github.com/jdoepfert/brukerMRI
- https://github.com/cmwalker/Bruker
- https://github.com/jamesjcook/mat_recon_pipe
- https://github.com/bennomeier/pyNMR
- https://github.com/mrirecon/bart
- https://github.com/gadgetron/gadgetron-python-ismrmrd-client
- https://github.com/gadgetron/gadgetron
- https://github.com/ismrmrd/ismrmrd-python
- https://github.com/mikgroup/espirit-python
- https://github.com/dfm/python-nufft
- https://github.com/jakevdp/nufftpy
- https://github.com/cea-cosmic/pysap
- https://pypi.org/project/imreg_dft/
- https://simpleelastix.github.io/
- https://fsl.fmrib.ox.ac.uk/fsl/fslwiki
- https://github.com/swederik/nipype
- http://nipype.readthedocs.io/en/latest/devel/software_using_nipype.html
- https://github.com/lruthotto/QSMReconstruction.m
- https://github.com/sunhongfu/QSM
- https://github.com/mathieuboudreau/qsm-tools
- https://github.com/daiweis05/QITK
- https://github.com/philgd/CVI-MRI
- https://github.com/gattia/PyMap
- https://github.com/gdurin/pyFitting
- https://github.com/neuropoly/qMRLab
- https://github.com/flohorovicic/pynoddy
- https://github.com/ecaruyer/qspace
- https://github.com/jsjol/NOW
- https://diffusionmritool.github.io/tutorial_qspacesampling.html
- https://github.com/nipy/dipy
- https://github.com/AthenaEPI/dmipy
- https://www.nitrc.org/projects/noddi_toolbox
- https://github.com/cbclab/MDT
- https://github.com/NYU-DiffusionMRI/Diffusion-Kurtosis-Imaging
- https://github.com/DiffusionMRITool/dmritool-MultiShellSampling
- https://bitbucket.org/siawoosh/acid-artefact-correction-in-diffusion-mri/
- https://oai.epi-ucsf.org/datarelease/
- http://www.ukbiobank.ac.uk/
- http://cai2r.net/resources/software/one-hundred-knee-mri-cases
- https://github.com/Radiomics/pyradiomics
- https://github.com/Radiomics/SlicerRadiomics
- https://pypi.org/project/MedPy/
- https://github.com/QTIM-Lab/DeepNeuro
- https://github.com/nilearn/nilearn
- https://github.com/WinawerLab
- https://github.com/mwaskom/lyman
- https://github.com/jlohmeier/atlasBREX
- https://github.com/taigw/brats17
- https://github.com/js3611/Deep-MRI-Reconstruction
- https://github.com/Kamnitsask/deepmedic
- Github.com/FlorianKnoll
- Colah.github.io/post/2015-08-Backprop
- https://qtim-lab.github.io/research/
- https://github.com/KaimingHe/deep-residual-networks
- https://github.com/ry/tensorflow-resnet
- https://github.com/pytorch/vision/blob/master/torchvision/models/resnet.py
- https://github.com/DeepLearnPhysics/pytorch-resnet-example
- https://github.com/alexjc/neural-enhance
- https://github.com/david-gpu/srez
- https://github.com/mriphysics
- https://github.com/khcs/brain-synthesis-lesion-segmentation/blob/master/utils/merge_2d_test_to_nii.py
- https://github.com/ad12/DOSMA
- https://github.com/neuropoly/coil_simulation_web
- https://github.com/BIC-MNI/mrisim
- https://github.com/leoliuf/MRiLab
- https://github.com/usc-mrel/lowfieldsim
- https://github.com/adamkettinger/phase-optimization-for-VCC
- https://github.com/thanospol/MARIE
- https://bitbucket.org/wgrissom/gnuradio-mri/src/master/
https://web.eecs.umich.edu/~fessler/code/ BART http://gpilab.com/ http://mridata.org/
http://people.eecs.berkeley.edu/~mlustig/Software.html
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