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[NeurIPS 2023] This is the official code for the paper "TPSR: Transformer-based Planning for Symbolic Regression"

Home Page: https://openreview.net/forum?id=0rVXQEeFEL

License: MIT License

Python 99.58% Shell 0.23% Makefile 0.19%
deep-learning language-model planning-algorithms symbolic-math symbolic-regression transformers interpretable-ml ai4math ai4science equation-discovery

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tpsr's Issues

ERROR: No matching distribution found for functorch==0.1.0

Hi,

Thanks for great research work.

I'm trying to install by following the instructions, but encounter an error, see below.

The conda create command works fine:

(base) joel@ubuntu:~/TPSR$ conda create --name tpsr python=3.7
Channels:
 - defaults
Platform: linux-aarch64
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /home/joel/miniconda3/envs/tpsr

  added / updated specs:
    - python=3.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    certifi-2022.12.7          |   py37hd43f75c_0         149 KB
    openssl-1.1.1w             |       h2f4d8fa_0         3.7 MB
    pip-22.3.1                 |   py37hd43f75c_0         2.7 MB
    python-3.7.16              |       h89984f6_0        44.8 MB
    setuptools-65.6.3          |   py37hd43f75c_0         1.1 MB
    wheel-0.38.4               |   py37hd43f75c_0          63 KB
    ------------------------------------------------------------
                                           Total:        52.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-aarch64::_libgcc_mutex-0.1-main
  _openmp_mutex      pkgs/main/linux-aarch64::_openmp_mutex-5.1-51_gnu
  ca-certificates    pkgs/main/linux-aarch64::ca-certificates-2023.12.12-hd43f75c_0
  certifi            pkgs/main/linux-aarch64::certifi-2022.12.7-py37hd43f75c_0
  ld_impl_linux-aar~ pkgs/main/linux-aarch64::ld_impl_linux-aarch64-2.38-h8131f2d_1
  libffi             pkgs/main/linux-aarch64::libffi-3.4.4-h419075a_0
  libgcc-ng          pkgs/main/linux-aarch64::libgcc-ng-11.2.0-h1234567_1
  libgomp            pkgs/main/linux-aarch64::libgomp-11.2.0-h1234567_1
  libstdcxx-ng       pkgs/main/linux-aarch64::libstdcxx-ng-11.2.0-h1234567_1
  ncurses            pkgs/main/linux-aarch64::ncurses-6.4-h419075a_0
  openssl            pkgs/main/linux-aarch64::openssl-1.1.1w-h2f4d8fa_0
  pip                pkgs/main/linux-aarch64::pip-22.3.1-py37hd43f75c_0
  python             pkgs/main/linux-aarch64::python-3.7.16-h89984f6_0
  readline           pkgs/main/linux-aarch64::readline-8.2-h998d150_0
  setuptools         pkgs/main/linux-aarch64::setuptools-65.6.3-py37hd43f75c_0
  sqlite             pkgs/main/linux-aarch64::sqlite-3.41.2-h998d150_0
  tk                 pkgs/main/linux-aarch64::tk-8.6.12-h241ca14_0
  wheel              pkgs/main/linux-aarch64::wheel-0.38.4-py37hd43f75c_0
  xz                 pkgs/main/linux-aarch64::xz-5.4.5-h998d150_0
  zlib               pkgs/main/linux-aarch64::zlib-1.2.13-h998d150_0


Proceed ([y]/n)?


Downloading and Extracting Packages:

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate tpsr
#
# To deactivate an active environment, use
#
#     $ conda deactivate

However, the pip install -r requirements.txt command fails:

(base) joel@ubuntu:~/TPSR$ pip install -r requirements.txt
Defaulting to user installation because normal site-packages is not writeable
Collecting args==0.1.0 (from -r requirements.txt (line 1))
  Downloading args-0.1.0.tar.gz (3.0 kB)
  Preparing metadata (setup.py) ... done
Collecting attrs==21.4.0 (from -r requirements.txt (line 2))
  Downloading attrs-21.4.0-py2.py3-none-any.whl (60 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.6/60.6 kB 736.7 kB/s eta 0:00:00
Collecting backcall==0.2.0 (from -r requirements.txt (line 3))
  Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting cachetools==5.3.0 (from -r requirements.txt (line 4))
  Downloading cachetools-5.3.0-py3-none-any.whl (9.3 kB)
Collecting certifi==2021.10.8 (from -r requirements.txt (line 5))
  Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 149.2/149.2 kB 2.1 MB/s eta 0:00:00
Collecting charset-normalizer==2.0.12 (from -r requirements.txt (line 6))
  Downloading charset_normalizer-2.0.12-py3-none-any.whl (39 kB)
Collecting clint==0.5.1 (from -r requirements.txt (line 7))
  Downloading clint-0.5.1.tar.gz (29 kB)
  Preparing metadata (setup.py) ... done
Collecting cloudpickle==2.2.1 (from -r requirements.txt (line 8))
  Downloading cloudpickle-2.2.1-py3-none-any.whl (25 kB)
Collecting coverage==6.3.2 (from -r requirements.txt (line 9))
  Downloading coverage-6.3.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (211 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 211.9/211.9 kB 4.5 MB/s eta 0:00:00
Collecting cycler==0.11.0 (from -r requirements.txt (line 10))
  Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting decorator==5.1.1 (from -r requirements.txt (line 11))
  Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting deepspeed==0.8.0 (from -r requirements.txt (line 12))
  Downloading deepspeed-0.8.0.tar.gz (749 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 749.9/749.9 kB 3.4 MB/s eta 0:00:00
  Preparing metadata (setup.py) ... done
Collecting fonttools==4.31.2 (from -r requirements.txt (line 13))
  Downloading fonttools-4.31.2-py3-none-any.whl (899 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 899.5/899.5 kB 3.8 MB/s eta 0:00:00
ERROR: Could not find a version that satisfies the requirement functorch==0.1.0 (from versions: 1.13.0, 1.13.1, 2.0.0)
ERROR: No matching distribution found for functorch==0.1.0

Here is some information on my platform:

(base) joel@ubuntu:~/TPSR$ lsb_release -a
No LSB modules are available.
Distributor ID:	Ubuntu
Description:	Ubuntu 22.04.3 LTS
Release:	22.04
Codename:	jammy
(base) joel@ubuntu:~/TPSR$ uname -a
Linux ubuntu 5.15.0-91-generic #101-Ubuntu SMP Tue Nov 14 13:29:11 UTC 2023 aarch64 aarch64 aarch64 GNU/Linux

Thanks for any advise on how to resolve!

/Joel

AttributeError: module 'signal' has no attribute 'SIGALRM'

Thanks for your great work.

When running the run.sh or run.py, I got an attribute error while it was rescaling the expression: refined_candidate[0]["predicted_tree"] = scaler.rescale_function(env, refined_candidate[0]["predicted_tree"], *scale_params[0])

Traceback (most recent call last):
  File "D:\xx\Anaconda\envs\deeplearning39\lib\site-packages\IPython\core\interactiveshell.py", line 3526, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "<ipython-input-1-60ea49bf5158>", line 2, in <module>
    scaler.rescale_function(env, refined_candidate[0]["predicted_tree"], *scale_params[0])
  File "D:\xx\TPSR\timeout.py", line 16, in wrapper
    signal.signal(signal.SIGALRM, _handle_timeout)
AttributeError: module 'signal' has no attribute 'SIGALRM'

I would need assistance with fixing an error. Can you please guide me on how to resolve this issue?

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