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Neonatal dHCP SHARD Pipeline

This repository contains the processing pipeline scripts used for the neonatal dMRI SHARD pipeline of the Developing Human Connectome Project (dHCP).

Dependencies:

Questions and support: [email protected]

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dhcp-shard-pipeline's Issues

missing registration command

I think adding the commands for the registration and composite warp creation would be good.

Rigid alignment to high-resolution structural (T2-weighted) space using normalised mutual information (NMI) based registration with FSL Flirt 8on the mean b=1000 s/mm2 shell. This transformation is combined with a non-linear registration9 of the T2w volume to the 40 weeks template10 to allow transformations between diffusion and atlas spaces. -- https://biomedia.github.io/dHCP-release-notes/dwi-shard.html

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