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cryoem-awsbatch

Executing Relion3 on AWS Batch

cryoem-cloud-tools

Software to integrate Relion GUI with Amazon Web Services, accompanied by easy command line tools. Learn more at cryoem-tools.cloud

cryosparc-docker

Docker wrapper for cryosparc

data-lake-as-code

Data Lake as Code, featuring ChEMBL and OpenTargets

datasharing

The Leek group guide to data sharing

de-id-medical-images

dlab

Self-service, Fail-safe Exploratory Environment for Collaborative Data Science Workflow

dna_search

simple DNA search

docassemble

A free, open-source expert system for guided interviews and document assembly, based on Python, YAML, and Markdown.

docker-airflow

Docker Apache Airflow

docmosis-cloud-sdk-java

This SDK makes it easy to invoke API calls on the Docmosis Cloud web service end points.

eks-kubeflow-workshop

Kubeflow workshop on EKS. Mainly focus on AWS integration examples. Please go check kubeflow website http://kubeflow.org for other examples

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

five-dollar-genome-analysis-pipeline

Workflows used for germline short variant discovery in WGS data

fsx-lustre-genomics-demo

Demo using FSx for Lustre for genomics workflows

gatk-nextflow

A Nextflow workflow to run GATK 4.1 modeled after the Broad's WDLs

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

genomics-secondary-analysis-using-aws-step-functions-and-aws-batch

genomicsml

gordb

hail

Scalable genomic data analysis.

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

i2b2-core-server

i2b2 server source code

i2b2-data

The i2b2 data repository

i2b2-quickstart

Quick automated installation of i2b2 in VMs, Amazon-Web-Service and Docker

i2b2-webclient

Source code for the i2b2 Web Client

i2b2-workbench

The source directory for the i2b2 Workbench

i2b2_1.6_postgres

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

irct

Merged IRCT Repository