databiosphere Goto Github PK

consent-ontology

Broad Institute Data Use Oversight System

consent-ui

Broad Institute Data Use Oversight System

cwl-tool-wrapper-workflow

A CWL workflow template for use in wrapping a CWL tool so that it can be registered on Dockstore as a workflow

data-browser

data-explorer

data-explorer-indexers

data-platforms

Components of the Commons Alliance

data-portal

data-portal-summary-stats

Generate descriptive figures of cell by gene matrices.

data-provider-service

data-store

AWS and GCP data storage system for genomic data.

data-store-auth

data-store authentication infra management

data-store-cli

Command line interface for the Data Biosphere data-store

data-store-kharon

Data deletion daemon for the Data Bioshpere data-store

databiosphere-website

A place to collect content for a data biosphere website

dog-aging-ingest

Batch ETL pipeline to mirror Dog Aging Project data into the Jade Data Repository.

dos-azul-lambda

Provides access to DSS azul-index in the Data Object Service schemas

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

duos-landing-api

duos-ui

Broad Institute Data Use Oversight System

duos-ui-landing

encode-ingest

Batch ETL pipeline to mirror ENCODE data into the Jade Data Repository.

env-base

Base framework environment k8s resources

example-authz-registry

example of maintaining authorization list via github + travis + s3

featured-notebooks

fhir

Broad FHIR is a FHIR Server that powers applications for Genomics research.

findable-ui

firecloud-app

getm

Concurrent reads of HTTP URL addressed data

github-actions

Data Biosphere GitHub Actions