PyRosetta InterfaceAnalyzer for AF multimer output models, also interface PAE and interface pLDDT
python AF2multimer_interface_analysis.py \
--input_pdb model_relaxed_rank_001_alphafold2_multimer_v3_model_1_seed_000.pdb \
--input_scores model_scores_rank_001_alphafold2_multimer_v3_model_1_seed_000.json \
--interface_chains A_B \
--output_csv NameOfAnOutputFile.csv
danton dot ivanochko at sickkids dot ca