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mellodetect's Issues

Initial data import and cleaning

download isic dataset along with classification associated with each image.
decide on best filetype and method to store images.

Exploration of problem space, compiling resources in excel sheet.

Good questions include:

  • What makes a mole cancerous?
  • What features of melanoma make it malignant?
  • When it comes to plain eyeball images vs CT scan images, is the goal to diagnose a malignant patch of skin, or to flag for future scanning (or does it depend on some other factors)?
  • What other questions can we ask to learn more about this problem space?

Error when using `workers` in DataLoader in beefyRunner and basicRunner

Error when using workers in DataLoader in beefyRunner and basicRunner. I think there might be some minimum requirements that I might not meet by running on docker.

ERROR: Unexpected bus error encountered in worker. This might be caused by insufficient shared memory (shm).
ERROR: Unexpected bus error encountered in worker. This might be caused by insufficient shared memory (shm).
ERROR: Unexpected bus error encountered in worker. This might be caused by insufficient shared memory (shm).
ERROR: Unexpected bus error encountered in worker. This might be caused by insufficient shared memory (shm).
  0%|                                                                                            | 0/10 [00:01<?, ?it/s]
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/dist-packages/torch/utils/data/dataloader.py", line 761, in _try_get_data
    data = self._data_queue.get(timeout=timeout)
  File "/usr/lib/python3.6/multiprocessing/queues.py", line 104, in get
    if not self._poll(timeout):
  File "/usr/lib/python3.6/multiprocessing/connection.py", line 257, in poll
    return self._poll(timeout)
  File "/usr/lib/python3.6/multiprocessing/connection.py", line 414, in _poll
    r = wait([self], timeout)
  File "/usr/lib/python3.6/multiprocessing/connection.py", line 911, in wait
    ready = selector.select(timeout)
  File "/usr/lib/python3.6/selectors.py", line 376, in select
    fd_event_list = self._poll.poll(timeout)
  File "/usr/local/lib/python3.6/dist-packages/torch/utils/data/_utils/signal_handling.py", line 66, in handler
    _error_if_any_worker_fails()
RuntimeError: DataLoader worker (pid 124) is killed by signal: Bus error. It is possible that dataloader's workers are out of shared memory. Please try to raise your shared memory limit.

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