danielnflam / deep-learning-models-for-bone-suppression-in-chest-radiographs Goto Github PK

Hello, I am a beginner at python programming, considering to use your bone-suppression model for my radiology research.
About a hundred chest radiographs in DICOM data are retrieved for evaluation.

I have several questions about how to run your pre-trained model

Input your desired dataset into datasets.py

In which line of py file should I input my dataset? What kind of data type (DICOM, NIFTI etc) is required?

Then, either: 2) Run analysis_script.ipynb on jupyter notebook or jupyter lab
Or: 2) Modify produce_suppressed_images to get your desired settings & paths 3) Run produce_suppressed_images.py in python console.

I am not using jupyter notebook. How can I change the setting and path? Which line of py file should I modify?

Thank you!