Comments (3)
daler
commented on September 16, 2024
Thanks for reporting this. The error you're seeing is because statsmodels is its own package now (as opposed to being part of scikits, like sklearn used to be).
There have been lots of improvements and fixes to metaseq recently, but I have not yet merged them all back into master or uploaded to PyPI. For now, please use the v0.5dev branch on github -- it has much better bigwig support, better binning, improved testing, and an API that will remain more stable over future development.
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olgabot
commented on September 16, 2024
Thanks! Switching to v0.5dev helped, but then I got ImportError: No module named integration. What fixed it was adding 'metaseq.integration' to setup.py, which is what is in this pull request: #5
And for kicks I also changed the version.py to be 0.5dev (from 0.1dev) because it was confusing when I was installing over the pip version with the v0.5dev branch.
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daler
commented on September 16, 2024
OK, glad it works now. Thanks for the pull request (see comments over on #5).
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Related Issues (20)
- MetaSeq on non-traditional files that have already been binned? HOT 8
- Can the browser be used to programmatically create graphs for genes of interest? HOT 2
- A problem when running the script HOT 4
- IndexError AND Value error HOT 3
- Issue with Example 1 HOT 2
- ValueError: x and y must have same first dimension
- py3: relative imports fail HOT 8
- Bamsignal attributes HOT 1
- multiprocessing HOT 3
- genomic_signal HOT 10
- How is missing data interpreted? HOT 9
- mapped_read_count() OSError: No such file or directory HOT 1
- Example1 problem #2 HOT 8
- how can I use the bam file to draw the figure which contain the tss ,gene body and tts? thank you! HOT 3
- sample snippet for the ChIP signal visualization? HOT 1
- Segmentation fault
- subplots using metaseq.plotutils.imshow
- Example1 problem#3 can't find metaseq
- use of bedGraphs in genomic_signal
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