Comments (2)
I think that installing pybedtools itself may have fixed this issue, because example1 now works. I installed metaseq using pip. should pybedtools be included in the package? thanks!
from metaseq.
The error you're getting is that slopBed
from BEDTools
was not on your path. It could be that you hadn't added it to your $PATH when you got that error (or that you needed to restart your terminal). And pybedtools
is actually already a dependency of metaseq
, so it should have been installed when installing metaseq. Anyway, glad it works now!
from metaseq.
Related Issues (20)
- MetaSeq on non-traditional files that have already been binned? HOT 8
- Can the browser be used to programmatically create graphs for genes of interest? HOT 2
- A problem when running the script HOT 4
- IndexError AND Value error HOT 3
- ValueError: x and y must have same first dimension
- py3: relative imports fail HOT 8
- Bamsignal attributes HOT 1
- multiprocessing HOT 3
- genomic_signal HOT 10
- How is missing data interpreted? HOT 9
- mapped_read_count() OSError: No such file or directory HOT 1
- Example1 problem #2 HOT 8
- how can I use the bam file to draw the figure which contain the tss ,gene body and tts? thank you! HOT 3
- sample snippet for the ChIP signal visualization? HOT 1
- Segmentation fault
- subplots using metaseq.plotutils.imshow
- Example1 problem#3 can't find metaseq
- use of bedGraphs in genomic_signal
- cannot import name 'data_dir' from 'helpers' HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from metaseq.