This R package can be used to analyse time series data for microbial communities. The package is part of miaverse, and is based on the TreeSummarizedExperiment data container.

See the package homepage for example workflows.

The package can be directly installed from R command line.

devtools::install_github("microbiome/miaTime")
library(miaTime)

You can find us online from Gitter.

Contributions are very welcome through issues and pull requests at the development site. We follow a git flow kind of approach. Development version should be done against the main branch and then merged to release for release. (https://guides.github.com/introduction/flow/)

Kindly cite this work. For citation details, see R command

citation("miaTime")  

## Kindly cite the miaTime R package as follows:
## 
##   (C) Yagmur Simsek and Leo Lahti. miaTime R package Version 0.1.21
##   Package URL: microbiome.github.io/miaTime
## 
## A BibTeX entry for LaTeX users is
## 
##   @Misc{,
##     title = {miaTime R package},
##     author = {Yagmur Simsek and Leo Lahti},
##     url = {microbiome.github.io/miaTime},
##     note = {Version 0.1.21},
##   }

The project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.