d2jvkpn / gffinfor Goto Github PK

GFF/GTF(.gz) summary and attributions extraction, usage:
  sequences, sources, types summary
    $ Gffinfor  
    # stdin ("-") will be treated as gff format

  selected types' attributions statistics
    $ Gffinfor    
    # "" for any type

  extract attributions and Dbxref (tsv format)
    $ Gffinfor       \
        [h1:H1,h2:H2]
    # attr "4" for position in "sequence_id:start:end:strand" format, 
    #   colname: position
    # attr "3" for the type(3rd column), colname: type
    # attr "0" for all columns(whole line), colnames: 1 2 3 4 5 6 7 8 9
    # [h1:H1,h2:H2] for rename tsv header