cthoyt Goto Github PK

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Name: Charles Tapley Hoyt

Type: User

Bio: On sabbatical until Fall 2024 - unable to respond

Location: Bonn, Germany

Hi there 👋

I work with biological knowledge graphs, machine learning, and artificial intelligence to identify active molecules and to deconvolute their mechanisms of action.

🧰 My Projects

📮 Bioregistry: an integrative registry of biological databases, ontologies, and nomenclatures.
🧬 Biological Expression Language (BEL): a domain specific language for representing molecular biology
🌶️ PyBEL: the computational ecosystem for compiling, querying, and analyzing knowledge graphs encoded in BEL
📛 PyOBO: making ontologies and semantics accessible
🤖 PyKEEN: knowledge graph embedding models for humans

⚖️ My Core Scientific Values

♻️ Reproducibility: code is part of the scientific process. It should be documented and re-usable by anyone.
🔓 Openness: science is best when people can build on each others' work. Sharing data, code, and ideas has benefitted everyone, and is also the responsiblity of a scientist to pay forward.
🎯 Thoroughness: quality is dependent on taking great care throughout all steps

📫 My Interblag

Besides my email and blog (on the left), I'm also in the internet in the following places:

Charles Tapley Hoyt's Projects

pytorch_geometric

Graph Neural Network Library for PyTorch

pytorch_scatter

PyTorch Extension Library of Optimized Scatter Operations

pyuniprot

Python package to query and analyse UniProt

rascore

Retrosynthetic Accessibility (RA) score learned from computer aided synthesis planning

An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.