This repository contains scripts to construct a docker image for GraphProt.

This docker image is available on dockerhub. docker pull croth1/graphprot downloads the latest version.

Data from a directory on the host can be mounted using -v <host_path>:/data. The docker image uses /data as working directory.

Following syntax will run GraphProt:

docker run -v <host_path>:/data croth/graphprot <graphprot_options>

Host file system:

/path/to/host/data
├── negset.fa
└── posset.fa

Training a GraphProt model:

docker run -v /path/to/host/data:/data croth/graphprot --action train -fasta posset.fa -negset negset.fa

Building the docker image requires docker.

git clone https://github.com/croth1/graphprot-docker.git
cd graphprot-docker
make