cristianetaniguti / reads2map Goto Github PK
View Code? Open in Web Editor NEWA collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
License: MIT License
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
License: MIT License
Olhe na branch "sub_workflow", eu adicionei um arquivo main.wdl com um esboço do que pretendo fazer.
Eu modifiquei o reads_simu.wdl para receber o seed de fora (não do arquivo json), também tirei o nome da familia porque achei desnecessário.
I try the EmpiricalSNPCalling pipeline using Pumbaa with example files in WSL in Windows 10. I follow the steps on the guide page. But I get the error "Workflow input processing failed".
../bin/pumbaa metadata -o 00461381-62e3-418c-885e-d1d0845acfc7
2023/07/08 23:52:40 GET request to: http://127.0.0.1:8000/api/workflows/v1/00461381-62e3-418c-885e-d1d0845acfc7/metadata?excludeKey=executionEvents&excludeKey=jes&excludeKey=inputs
+------+---------+---------+--------+
| TASK | ATTEMPT | ELAPSED | STATUS |
+------+---------+---------+--------+
+------+---------+---------+--------+
❗You have 1 issue:
I check the path and files are correct, when I run "java -jar ~/.cromwell/cromwell.jar run EmpiricalSNPCalling_develop/EmpiricalSNPCalling_develop.wdl -i test.json." it would not note input error info. hope for your help.
Hello
I have pair-end fastq files, how can I do some adjust for running Reads2Map, thanks!
Make Reads2Map output for polyploid species compatible with Reads2MapApp
Após o upgrade para a versão 1 os calls ficaram fora da ordem lógica que um humano espera.
Precisamos reorganizar isso.
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