Malaria

testing

testing nano

1  la
2  ls
3  cd /scratch
4  ls
5  git clone https://github.com/crestre/FOSS-Spring-2021-Group-5-Captsone-I.git
6  wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
7  bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
8  ln -s /opt/conda/pkgs/*/bin/* /bin
9  ln -s /opt/conda/pkgs/*/lib/* /usr/lib

10 /opt/conda/bin/conda install -c conda-forge -y jupyterlab=1.2.3 11 /opt/conda/bin/conda install -c conda-forge -y nodejs=10.13.0 12 /opt/conda/bin/pip install bash_kernel 13 /opt/conda/bin/pip install ipykernel 14 /opt/conda/bin/python3 -m bash_kernel.install 15 conda searchjupyterlab 16 conda 17 conda search 18 conda search jupyterlab=1.2.3 19 /opt/conda/bin/jupyter lab --no-browser --allow-root --ip=0.0.0.0 --NotebookApp.token='' --NotebookApp.password='' --notebook-dir='/scratch/reproducibility-tutorial/' 20 ls 21 git clone https://github.com/crestre/reproducibility-tutorial.git 22 ls 23 /opt/conda/bin/jupyter lab --no-browser --allow-root --ip=0.0.0.0 --NotebookApp.token='' --NotebookApp.password='' --notebook-dir='/scratch/reproducibility-tutorial/' 24 /opt/conda/bin/conda search -c bioconda snakemake 25 /opt/conda/bin/conda install -c bioconda -c conda-forge -y snakemake=5.8.1 26 wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh 27 bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda 28 ln -s /opt/conda/pkgs//bin/ /bin 29 /opt/conda/bin/conda search -c bioconda snakemake 30 /opt/conda/bin/conda install -c bioconda -c conda-forge -y snakemake=5.8.1 31 conda config --set channel_priority false 32 conda install -c spyder-ide spyder-unittest 33 /opt/conda/bin/conda search -c bioconda snakemake 34 /opt/conda/bin/conda install -c bioconda -c conda-forge -y snakemake=5.8.1 35 ln -s /opt/conda/bin/* /bin 36 ln -s /opt/conda/lib/* /usr/lib 37 snakemake --version 38 apt install snakemake 39 snakemake --version 40 sudo apt-get update 41 sudo apt-get install -y apt-transport-https ca-certificates curl gnupg-agent software-properties-common 42 curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add - 43 sudo add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu
44 $(lsb_release -cs)
45 stable" 46 sudo apt-get update 47 sudo apt-get install -y docker-ce docker-ce-cli containerd.io 48 docker run hello-world 49 cd /scratch/reproducibility-tutorial/ 50 ls 51 history >>README.md 52 nano README.md 53 cd /scratch 54 ls 55 df -h 56 git clone https://github.com/crestre/reproducibility-tutorial.git 57 wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh 58 ls 59 bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda 60 ln -s /opt/conda/pkgs//bin/ /bin 61 ln -s /opt/conda/pkgs//lib/ /usr/lib 62 /opt/conda/bin/jupyter lab --no-browser --allow-root --ip=0.0.0.0 --NotebookApp.token='' --NotebookApp.password='' --notebook-dir='/scratch/reproducibility-tutorial/' 63 cd /scratch 64 /opt/conda/bin/conda search -c bioconda snakemake 65 /opt/conda/bin/conda install -c bioconda -c conda-forge -y snakemake=5.8.1 66 s 67 ls 68 snakemake --version 69 sudo apt-get update 70 sudo apt-get install -y apt-transport-https ca-certificates curl gnupg-agent software-properties-common 71 curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add - 72 sudo add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu
$(lsb_release -cs)
stable" 73 sudo apt-get update 74 sudo apt-get install -y docker-ce docker-ce-cli containerd.io 75 docker run hello-world 76 cd /scratch/reproducibility-tutorial/ 77 ls 78 history >>README.md