katacoda's People
katacoda's Issues
Is there interest in a "how to use conda" scenario?
The following was removed from a draft of the NASP scenario.
Why conda?
There is any number of ways to install programs. We will use the conda package manager.
- it is cross platform
- it aims to be reproducible
The main highlights
What does the script do?
By default, conda
will be installed under $HOME/miniconda3/
. conda init
add a snippet to
Community channels
There are two conda community 'channels' that work closely together:
- bioconda focuses on bioinformatic software
- conda-forge focuses on everything else including non-biospecific dependencies
conda search -c conda-forge -c bioconda
{{execute}}
https://github.com/bioconda/bioconda-recipes
TODO: create a scenario specifically for conda that will teach users how to:
- install/update conda
- manage environments
- install/update/remove packages
- feeze/export/share environments for reproducibility
- create/build/install unpublished packages
- publish packages to bioconda/conda-forge
TODO: reduce this step to simply installing miniconda and refer users to the above conda scenario to learn more.
Conda solver slowdown FAQ and recommendations bioconda#13774
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.