incompatibility of the tensorflow version with the numpy version about cheui HOT 8 CLOSED

Numpy recommendation downgraded to 1.19.5. Thanks Rania!

from cheui.

Hi,

it should be fine if the TensorFlow is installed properly.

Best

E.

from cheui.

Hi @EduEyras

Thanks for your fast reply.
I have another question, I would like to test CHEUI and other tools on the IVT sequences you used in the paper.
I was wondering where you got the modified fast5 m6A from Jenjaroenpun, P. et al. because I did not find a m6A fast5 file in this link :
https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=study&acc=SRP166020

Rania

from cheui.

Hi Rania,

Thanks for testing CHEUI. Yes, if the fast5 are not available to download from the link you will have to contact the authors.

Thanks,
Akanksha

from cheui.

Hi @Akanksha2511

Thank you for your reply.
I already did but they're not reactive :/

Rania

from cheui.

thank you @Akanksha2511

I have one last question, I saw that the reads you used for training models 1 and 2 from Liu et al were obtained with the RNA001 kit. Wouldn't this be problematic since now all the dRNA sequences (as well as the data you used for your tests) are obtained with the RNA002 kit ?

Rania

from cheui.

from cheui.

Hi @EduEyras

thank you for your answer. I was curious because I saw that for Nanopolish polyA they had indeed detected a difference between the two kits [https://github.com/jts/nanopolish/issues/545], but maybe this difference only concerns the polyA tail.

Rania

from cheui.