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Name: Colin Davenport
Type: User
Bio: Bioinformatician at KWS SAAT SE. Nextflow, bioinformatics, metagenomics. My code is unfortunately mostly private.
Location: Germany
Name: Colin Davenport
Type: User
Bio: Bioinformatician at KWS SAAT SE. Nextflow, bioinformatics, metagenomics. My code is unfortunately mostly private.
Location: Germany
Snakemake pipeline for amplicon sequencing using dada2
Repository for AIControl project
16S rRNA amplicon sequencing analysis workflow using QIIME2
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
An Ansible role is for configuring the base operating system useful for running Galaxy.
Slurm-pipeline for polishing assemblys with nanopore reads
Awesome list of HiC data analysing tools
List of computational resources for analyzing microbial sequencing data.
A curated list of awesome nanopore analysis tools.
A curated list of nextflow based pipelines
A list of software for pangenomics
A curated list of amazingly awesome open source sysadmin resources inspired by Awesome PHP.
count DNA sequence reads in BAM files
a pileup library that embraces the huge
Conda recipes for the bioconda channel.
Demonstrating best practices for bioinformatics command line tools
Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools
A basic blast pipeline using nextflow
A tool that allows to get UMI counts from a single cell protein assay
An open and reliable container runtime
Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Basic docker image for ad-hoc genomic analyses
Galaxy Community Hub
:whale::bar_chart::books: Galaxy Docker Image to analyse RNA-Seq data
Galaxy RNA workbench
Ansible playbooks for Galaxy Server deployment
GenMap - Fast and Exact Computation of Genome Mappability
List of genome assembly tools
The shotgun metagenome analyzer genometa.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.