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mgm-26-grand-challenge's Introduction

Helper code for JGI IMG demo project

This small project was made as part of the MGM 26 workshop as a way to learn about the IMG/MER platform devoleped by the Joint Genome Institute (JGI).

data_img_exports

This folder holds data set exported from IMG. Both raw exports and modified files are included here.

output

This folder holds data sets processed by R. Samples were renamed to make their treatments clear.

As this photo shows, we had a great time!

@colinbrislawn is the informatics POC for this project. If you have any questions or suggestions, feel free to open an issue.

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mgm-26-grand-challenge's Issues

remove duplicates from KEGG annotation files

When exporting Kegg_Carbon.xls from IMG, I included both carbon and nitrogen KEGGs. While this duplication does not change the results, it's confusing and unneeded; enriched functions appear twice on the bar graphs.

  • Rename Kegg_Carbon.xls to Kegg_Carbon_and_Nitrogen.xls and update RMD to match.

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