Supplementary code to M2 report
We used the packages and modified the code from:
- Liger: https://github.com/MacoskoLab/liger (see here for changes: https://github.com/claire-lansonneur/liger/blob/quantile_norm-list/R/liger.R)
- fgsea: https://github.com/ctlab/fgsea
- msigdbr: https://cran.r-project.org/web/packages/msigdbr/index.html