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download_hcp

Tools to download data from the Human Connectome Project repostiories

dusort

A storage/inode analyzer for Linux

extended-godiva

An extended version of the neuro-computational model GODIVA. Includes a basal ganglia (BG) - ventral premotor cortex (vPMC) loop that serves to select and initiate the correct syllables and in a timely manner.

fix_bash

Configure the Bash shell to behave more similar to modern scripting languages

git-workshop

hcp-dmri-connectome

MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRI data

mfcsc

MFCSC: Novel method to calculate mismatch between functional and structural brain connectomes

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

mrtrix3_connectome

Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the MRtrix3 software package.

neurocommand

A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging

neurocontainers

The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines

neurodesk.github.io

neurodesktop

The plug-and-play, browser-accessible, containerised data analysis environment.

reduce_density

Reduce the density of bidirectional connectivity matrices

rsync_screen

Linux file transfer that sustains network interruptions

safermrf

Folder deletion for Linux with safeguards against human error

show_connectome

Visualise connectivity matrices in the browser via Google Colab (no installation necessary and data is not shared with a 3rd party)

sovabids

A python package for the automatic conversion of EEG datasets to the BIDS standard, with a focus on making the most out of metadata.

tree2dir

Facilitate accessing files in a tree structure from a single directory

vnm

Virtual Neuro Machine. The initial version of Neurodesktop

vscatter

One dimensional vertical scatterplot which emphasizes distribution of values