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Kidash: A GrimoireLab tool & library to manage Kibana/Kibiter visualizations and dashboards

License: GNU General Public License v3.0

Python 100.00%

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Error uploading dashboard to Elasticsearch 6.x

Hi,

I've saved a dashboard from Kibiter 6.1.0-2, using kidash --export. When trying to upload again that dashboard to a new instance of Elasticsearch, I get:

$ kidash --import ~/src/jgbarah-grimoire/overview.json 
Traceback (most recent call last):
  File "/tmp/gl/bin/kidash", line 77, in <module>
    ARGS.data_sources, ARGS.add_vis_studies)
  File "/tmp/gl/lib/python3.5/site-packages/kidash/kidash.py", line 703, in import_dashboard
    feed_dashboard(dashboard, elastic_url, es_index, data_sources, add_vis_studies)
  File "/tmp/gl/lib/python3.5/site-packages/kidash/kidash.py", line 720, in feed_dashboard
    dashboard['dashboard']['value'], data_sources, add_vis_studies)
  File "/tmp/gl/lib/python3.5/site-packages/kidash/kidash.py", line 230, in import_item_json
    item_json = fix_dashboard_heights(item_json)
  File "/tmp/gl/lib/python3.5/site-packages/kidash/kidash.py", line 123, in fix_dashboard_heights
    if panel['size_y'] == 1:
KeyError: 'size_y'

This is with the most recent kidash, 0.4.2.

Find attached dashboard.json (as I said, exported from Kibiter via kidash): overview.json.gz

Installing Kidash fails

Hi, sorry for the mess.

This is the message we got when I tried installing Kidash on my MacBook Pro during the GrimoireLab call today.

full log: https://gist.github.com/GeorgLink/40c2ad776b0a68dbad0c12bddc884879

abbreviated log below:

MacBook-Air:~ georglink$ . kidash-venv/bin/activate
(kidash-venv) MacBook-Air:~ georglink$ pip3 install kidash
Collecting kidash
  Downloading https://files.pythonhosted.org/packages/22/5d/895e6bfa8f42deba8351c6e4a62690398c081802ce31f1f435d950abd85c/kidash-0.4.15-py3-none-any.whl
Collecting python-dateutil (from kidash)
  Downloading https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl (227kB)
     |████████████████████████████████| 235kB 2.9MB/s 
Collecting grimoirelab-panels>=0.0.7 (from kidash)
  Downloading https://files.pythonhosted.org/packages/90/33/d000d450d95696b822f0838ed834fce211dc26f407feb03de64b431b9641/grimoirelab_panels-0.0.44-py3-none-any.whl (281kB)
     |████████████████████████████████| 286kB 40.5MB/s 
Collecting grimoire-elk>=0.30.18 (from kidash)
  Downloading https://files.pythonhosted.org/packages/64/31/982fea1cc2d4750fe99cf4ee8d280891effad8f0b74dc8e49174a2a4a9fd/grimoire_elk-0.63.0-py3-none-any.whl (234kB)
     |████████████████████████████████| 235kB 55.9MB/s 
Collecting six>=1.5 (from python-dateutil->kidash)
  Downloading https://files.pythonhosted.org/packages/65/26/32b8464df2a97e6dd1b656ed26b2c194606c16fe163c695a992b36c11cdf/six-1.13.0-py2.py3-none-any.whl
Collecting perceval-opnfv>=0.1.2 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/2d/10/320b734d8d2171294e9da3b2214b26c780901f921700369046f023616fd7/perceval_opnfv-0.1.16-py3-none-any.whl
Collecting perceval>=0.9.6 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/77/e4/20d3a1e4ab71d71c78ff4061ea3efa3e3eea9f7f70dd942fdbac645df0fb/perceval-0.12.24-py3-none-any.whl (183kB)
     |████████████████████████████████| 184kB 44.3MB/s 
Collecting sortinghat>=0.6.2 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/aa/5c/a4aeae6cb366e01471a2754f539dd1a1a93a7cda8c9418dfa9ee36a53b6d/sortinghat-0.7.7-py3-none-any.whl (152kB)
     |████████████████████████████████| 153kB 62.0MB/s 
Collecting redis<=2.10.6,>=2.10.0 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/3b/f6/7a76333cf0b9251ecf49efff635015171843d9b977e4ffcf59f9c4428052/redis-2.10.6-py2.py3-none-any.whl (64kB)
     |████████████████████████████████| 71kB 27.5MB/s 
Collecting graal>=0.2.2 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/d0/bc/fe1f9e45db8229ac616f2f5e98f58f9403219b76d9fb1e4360c4d8722d27/graal-0.2.3-py3-none-any.whl (54kB)
     |████████████████████████████████| 61kB 25.5MB/s 
Collecting pandas==0.22.0 (from grimoire-elk>=0.30.18->kidash)
  Downloading https://files.pythonhosted.org/packages/08/01/803834bc8a4e708aedebb133095a88a4dad9f45bbaf5ad777d2bea543c7e/pandas-0.22.0.tar.gz (11.3MB)
     |████████████████████████████████| 11.3MB 14.9MB/s 
  Installing build dependencies ... error
  ERROR: Command errored out with exit status 1:
   command: /Users/georglink/kidash-venv/bin/python3 /Users/georglink/kidash-venv/lib/python3.7/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-build-env-oqz8r_qr/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- wheel setuptools Cython 'numpy==1.9.3; python_version=='"'"'3.5'"'"'' 'numpy==1.12.1; python_version=='"'"'3.6'"'"'' 'numpy==1.13.1; python_version>='"'"'3.7'"'"''
       cwd: None
  Complete output (4394 lines):
  Ignoring numpy: markers 'python_version == "3.5"' don't match your environment
  Ignoring numpy: markers 'python_version == "3.6"' don't match your environment
  Collecting wheel
    Downloading https://files.pythonhosted.org/packages/00/83/b4a77d044e78ad1a45610eb88f745be2fd2c6d658f9798a15e384b7d57c9/wheel-0.33.6-py2.py3-none-any.whl
  Collecting setuptools
    Downloading https://files.pythonhosted.org/packages/54/28/c45d8b54c1339f9644b87663945e54a8503cfef59cf0f65b3ff5dd17cf64/setuptools-42.0.2-py2.py3-none-any.whl (583kB)
  Collecting Cython
    Downloading https://files.pythonhosted.org/packages/9b/e6/6e30303d7bc17289411d82276b7338a1781964171c94f5ebe689cbecad4c/Cython-0.29.14-cp37-cp37m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (2.9MB)
  Collecting numpy==1.13.1
    Downloading https://files.pythonhosted.org/packages/c0/3a/40967d9f5675fbb097ffec170f59c2ba19fc96373e73ad47c2cae9a30aed/numpy-1.13.1.zip (5.0MB)
  Installing collected packages: wheel, setuptools, Cython, numpy
    Running setup.py install for numpy: started
      Running setup.py install for numpy: still running...
      Running setup.py install for numpy: finished with status 'error'
      ERROR: Command errored out with exit status 1:
       command: /Users/georglink/kidash-venv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-install-0n5b5oji/numpy/setup.py'"'"'; __file__='"'"'/private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-install-0n5b5oji/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-record-fpe78ui0/install-record.txt --single-version-externally-managed --prefix /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-build-env-oqz8r_qr/overlay --compile --install-headers /Users/georglink/kidash-venv/include/site/python3.7/numpy
           cwd: /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-install-0n5b5oji/numpy/
      Complete output (4372 lines):
      Running from numpy source directory.
  
      Note: if you need reliable uninstall behavior, then install
      with pip instead of using `setup.py install`:
  
        - `pip install .`       (from a git repo or downloaded source
                                 release)
        - `pip install numpy`   (last NumPy release on PyPi)
  
  
      blas_opt_info:
      blas_mkl_info:
        libraries mkl_rt not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      blis_info:
        libraries blis not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      openblas_info:
        libraries openblas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      atlas_3_10_blas_threads_info:
      Setting PTATLAS=ATLAS
        libraries tatlas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      atlas_3_10_blas_info:
        libraries satlas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      atlas_blas_threads_info:
      Setting PTATLAS=ATLAS
        libraries ptf77blas,ptcblas,atlas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      atlas_blas_info:
        libraries f77blas,cblas,atlas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
        FOUND:
          extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
          extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
          define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
      /bin/sh: svnversion: command not found
      non-existing path in 'numpy/distutils': 'site.cfg'
      /bin/sh: svnversion: command not found
      F2PY Version 2
      lapack_opt_info:
      lapack_mkl_info:
        libraries mkl_rt not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      openblas_lapack_info:
        libraries openblas not found in ['/Users/georglink/kidash-venv/lib', '/usr/local/lib', '/usr/lib']
        NOT AVAILABLE
  
      atlas_3_10_threads_info:
      Setting PTATLAS=ATLAS
        libraries tatlas,tatlas not found in /Users/georglink/kidash-venv/lib
        libraries lapack_atlas not found in /Users/georglink/kidash-venv/lib
        libraries tatlas,tatlas not found in /usr/local/lib
        libraries lapack_atlas not found in /usr/local/lib
        libraries tatlas,tatlas not found in /usr/lib
        libraries lapack_atlas not found in /usr/lib
      <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
        NOT AVAILABLE
  
      atlas_3_10_info:
        libraries satlas,satlas not found in /Users/georglink/kidash-venv/lib
        libraries lapack_atlas not found in /Users/georglink/kidash-venv/lib
        libraries satlas,satlas not found in /usr/local/lib
        libraries lapack_atlas not found in /usr/local/lib
        libraries satlas,satlas not found in /usr/lib
        libraries lapack_atlas not found in /usr/lib
      <class 'numpy.distutils.system_info.atlas_3_10_info'>
        NOT AVAILABLE
  
      atlas_threads_info:
      Setting PTATLAS=ATLAS
        libraries ptf77blas,ptcblas,atlas not found in /Users/georglink/kidash-venv/lib
        libraries lapack_atlas not found in /Users/georglink/kidash-venv/lib
        libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
        libraries lapack_atlas not found in /usr/local/lib
        libraries ptf77blas,ptcblas,atlas not found in /usr/lib
        libraries lapack_atlas not found in /usr/lib
      <class 'numpy.distutils.system_info.atlas_threads_info'>
        NOT AVAILABLE
  
      atlas_info:
        libraries f77blas,cblas,atlas not found in /Users/georglink/kidash-venv/lib
        libraries lapack_atlas not found in /Users/georglink/kidash-venv/lib
        libraries f77blas,cblas,atlas not found in /usr/local/lib
        libraries lapack_atlas not found in /usr/local/lib
        libraries f77blas,cblas,atlas not found in /usr/lib
        libraries lapack_atlas not found in /usr/lib
      <class 'numpy.distutils.system_info.atlas_info'>
        NOT AVAILABLE
  
        FOUND:
          extra_compile_args = ['-msse3']
          extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
          define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
        warnings.warn(msg)
      running install
      running build
      running config_cc
      unifing config_cc, config, build_clib, build_ext, build commands --compiler options
      running config_fc
      unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
      running build_src
      build_src
      building py_modules sources
      creating build
      creating build/src.macosx-10.15-x86_64-3.7
      creating build/src.macosx-10.15-x86_64-3.7/numpy
      creating build/src.macosx-10.15-x86_64-3.7/numpy/distutils
      building library "npymath" sources
      customize Gnu95FCompiler
      Could not locate executable gfortran
      Could not locate executable f95
      customize NAGFCompiler
      customize AbsoftFCompiler
      Could not locate executable f90
      Could not locate executable f77
      customize IBMFCompiler
      Could not locate executable xlf90
      Could not locate executable xlf
      customize IntelFCompiler
      Could not locate executable ifort
      Could not locate executable ifc
      customize GnuFCompiler
      Could not locate executable g77
      customize G95FCompiler
      Could not locate executable g95
      customize PGroupFCompiler
      Could not locate executable pgfortran
      don't know how to compile Fortran code on platform 'posix'
      C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers
---------------------- SNIP --------------------
      creating build/temp.macosx-10.15-x86_64-3.7/numpy/random
      creating build/temp.macosx-10.15-x86_64-3.7/numpy/random/mtrand
      compile options: '-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/Users/georglink/kidash-venv/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -c'
      clang: numpy/random/mtrand/mtrand.c
      numpy/random/mtrand/mtrand.c:44374:65: error: too many arguments to function call, expected 3, have 4
          return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                     ^~~~
      /Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
      #  define NULL ((void*)0)
                     ^~~~~~~~~~
      numpy/random/mtrand/mtrand.c:44793:21: error: no member named 'exc_type' in 'struct _ts'
          *type = tstate->exc_type;
                  ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44794:22: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          *value = tstate->exc_value;
                           ^~~~~~~~~
                           curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44795:19: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          *tb = tstate->exc_traceback;
                        ^~~~~~~~~~~~~
                        curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44802:24: error: no member named 'exc_type' in 'struct _ts'
          tmp_type = tstate->exc_type;
                     ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44803:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tmp_value = tstate->exc_value;
                              ^~~~~~~~~
                              curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44804:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tmp_tb = tstate->exc_traceback;
                           ^~~~~~~~~~~~~
                           curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44805:13: error: no member named 'exc_type' in 'struct _ts'
          tstate->exc_type = type;
          ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44806:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tstate->exc_value = value;
                  ^~~~~~~~~
                  curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44807:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tstate->exc_traceback = tb;
                  ^~~~~~~~~~~~~
                  curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44862:24: error: no member named 'exc_type' in 'struct _ts'
          tmp_type = tstate->exc_type;
                     ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44863:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tmp_value = tstate->exc_value;
                              ^~~~~~~~~
                              curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44864:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tmp_tb = tstate->exc_traceback;
                           ^~~~~~~~~~~~~
                           curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44865:13: error: no member named 'exc_type' in 'struct _ts'
          tstate->exc_type = local_type;
          ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44866:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tstate->exc_value = local_value;
                  ^~~~~~~~~
                  curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44867:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tstate->exc_traceback = local_tb;
                  ^~~~~~~~~~~~~
                  curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      16 errors generated.
      numpy/random/mtrand/mtrand.c:44374:65: error: too many arguments to function call, expected 3, have 4
          return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                     ^~~~
      /Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
      #  define NULL ((void*)0)
                     ^~~~~~~~~~
      numpy/random/mtrand/mtrand.c:44793:21: error: no member named 'exc_type' in 'struct _ts'
          *type = tstate->exc_type;
                  ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44794:22: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          *value = tstate->exc_value;
                           ^~~~~~~~~
                           curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44795:19: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          *tb = tstate->exc_traceback;
                        ^~~~~~~~~~~~~
                        curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44802:24: error: no member named 'exc_type' in 'struct _ts'
          tmp_type = tstate->exc_type;
                     ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44803:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tmp_value = tstate->exc_value;
                              ^~~~~~~~~
                              curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44804:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tmp_tb = tstate->exc_traceback;
                           ^~~~~~~~~~~~~
                           curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44805:13: error: no member named 'exc_type' in 'struct _ts'
          tstate->exc_type = type;
          ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44806:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tstate->exc_value = value;
                  ^~~~~~~~~
                  curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44807:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tstate->exc_traceback = tb;
                  ^~~~~~~~~~~~~
                  curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44862:24: error: no member named 'exc_type' in 'struct _ts'
          tmp_type = tstate->exc_type;
                     ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44863:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tmp_value = tstate->exc_value;
                              ^~~~~~~~~
                              curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44864:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tmp_tb = tstate->exc_traceback;
                           ^~~~~~~~~~~~~
                           curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      numpy/random/mtrand/mtrand.c:44865:13: error: no member named 'exc_type' in 'struct _ts'
          tstate->exc_type = local_type;
          ~~~~~~  ^
      numpy/random/mtrand/mtrand.c:44866:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
          tstate->exc_value = local_value;
                  ^~~~~~~~~
                  curexc_value
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
          PyObject *curexc_value;
                    ^
      numpy/random/mtrand/mtrand.c:44867:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
          tstate->exc_traceback = local_tb;
                  ^~~~~~~~~~~~~
                  curexc_traceback
      /usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
          PyObject *curexc_traceback;
                    ^
      16 errors generated.
      error: Command "clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/Users/georglink/kidash-venv/include -I/usr/local/Cellar/python/3.7.5/Frameworks/Python.framework/Versions/3.7/include/python3.7m -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/private -Ibuild/src.macosx-10.15-x86_64-3.7/numpy/core/src/npymath -c numpy/random/mtrand/mtrand.c -o build/temp.macosx-10.15-x86_64-3.7/numpy/random/mtrand/mtrand.o -MMD -MF build/temp.macosx-10.15-x86_64-3.7/numpy/random/mtrand/mtrand.o.d" failed with exit status 1
      ----------------------------------------
  ERROR: Command errored out with exit status 1: /Users/georglink/kidash-venv/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-install-0n5b5oji/numpy/setup.py'"'"'; __file__='"'"'/private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-install-0n5b5oji/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-record-fpe78ui0/install-record.txt --single-version-externally-managed --prefix /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-build-env-oqz8r_qr/overlay --compile --install-headers /Users/georglink/kidash-venv/include/site/python3.7/numpy Check the logs for full command output.
  WARNING: You are using pip version 19.2.3, however version 19.3.1 is available.
  You should consider upgrading via the 'pip install --upgrade pip' command.
  ----------------------------------------
ERROR: Command errored out with exit status 1: /Users/georglink/kidash-venv/bin/python3 /Users/georglink/kidash-venv/lib/python3.7/site-packages/pip install --ignore-installed --no-user --prefix /private/var/folders/c_/6slmxw9d3pvgx61cm_b_82wc0000gn/T/pip-build-env-oqz8r_qr/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- wheel setuptools Cython 'numpy==1.9.3; python_version=='"'"'3.5'"'"'' 'numpy==1.12.1; python_version=='"'"'3.6'"'"'' 'numpy==1.13.1; python_version>='"'"'3.7'"'"'' Check the logs for full command output.
WARNING: You are using pip version 19.2.3, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
(kidash-venv) MacBook-Air:~ georglink$ MacBook-Air:~ georglink$ . kidash-venv/bin/activate
-bash: MacBook-Air:~: command not found
(kidash-venv) MacBook-Air:~ georglink$ (kidash-venv) MacBook-Air:~ georglink$ pip3 install kidash
-bash: syntax error near unexpected token `MacBook-Air:~'
(kidash-venv) MacBook-Air:~ georglink$

A error after 'kidash --help'

I successfully installed kidash but when i use kidash --help,i got a error:

Traceback (most recent call last):
File "/usr/local/bin/kidash", line 4, in
import('pkg_resources').run_script('kidash==0.4.21', 'kidash')
File "/usr/local/lib/python3.6/dist-packages/pkg_resources/init.py", line 651, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/usr/local/lib/python3.6/dist-packages/pkg_resources/init.py", line 1438, in run_script
.format(**locals()),
pkg_resources.ResolutionError: Script 'scripts/kidash' not found in metadata at '/usr/local/lib/python3.6/dist-packages/kidash-0.4.21.dist-info'

how to solve it?

Missing --export documentation

In the README, I don't see any documentation about how to export a panel I've created.

From kidash --help, I get this:

usage: usage: kidash [options]

Import or Export a Kibana Dashboard

optional arguments:
  -h, --help            show this help message and exit
  -e ELASTIC_URL, --elastic_url ELASTIC_URL
                        Host with elastic search(default:
                        http://127.0.0.1:9200)
  --elastic_url-enrich ELASTIC_URL_ENRICH
                        Host with elastic search and enriched indexes
  --dashboard DASHBOARD
                        Kibana dashboard id to export
  --export EXPORT_FILE  file with the dashboard exported
  --import IMPORT_FILE  file with the dashboard to be imported
  --kibana KIBANA_INDEX
                        Kibana index name (.kibana default)
  --list                list available dashboards
  -g, --debug
  --data-sources DATA_SOURCES [DATA_SOURCES ...]
                        Data sources to be included
  --add-vis-studies     Include visualizations for studies

kidash must create the .kibana index using Kibana for versions >= 6.1

After Kibana 6.1 the .kibana index, in which all information related to index patterns, dashboards, visualization and searches is stored, it is not created by Kibana until it is needed. When Kibana creates this .kibana index it includes some templates in it in order to control how the mappings are created.

kidash for importing a dashboard load all the data in the .kibana index. If it does not exists, it is created by Elasticsearch with the first load of data into it by kidash. But it is not created with the templates that Kibana needs, so this .kibana index won't work as expected and for example, index patterns won't work.

In order to fix this issue, kidash must check if .kibana index exists in versions >= 6.1 and if not, it must create it, before any import. To create this index using Kibana, the Kibana REST API can be used as described by one of the Kibana core developers here.

Unable to export a panel from CHAOSS dashboard

I've created a panel in CHAOSS dashboard, but I am not able of exporting it.

This is what I've tried and what I've got:

$ kidash -e https://chaoss.biterg.io:9200 --dashboard 3f4bf390-b29a-11e8-bbe5-d99a6d067cbc --export C_jbc.json
2018-09-10 10:34:38,168 Retrying (Retry(total=20, connect=20, read=8, redirect=5, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x7f6198bf9f28>: Failed to establish a new connection: [Errno 111] Connection refused',)': /

$kidash -e https://bitergia:************@chaoss.biterg.io:9200 --dashboard 3f4bf390-b29a-11e8-bbe5-d99a6d067cbc --export C_jbc.json
2018-09-10 10:36:18,816 Retrying (Retry(total=20, connect=20, read=8, redirect=5, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x7f60d7ee8f28>: Failed to establish a new connection: [Errno 111] Connection refused',)': /

Even kidash -e ... --list gives a Connection refused error.

Am I doing something wrong or is there a bug here?

Update documentation for kidash

The documentation at https://github.com/chaoss/grimoirelab-kidash/blob/master/README.md is not up-to-date.

It should contain at least the basic command to export and import dashboards, something like:

Export a dashboard
kidash -g -e <elasticsearch-url> --dashboard <dashboard-id>* --export <local-file-path>
example: kidash -g -e https://admin:admin@localhost:9200 --dashboard overview --export overview.json

The <dashboard-id> is visible in the URL of dashboard.

Import a dashboard
kidash -g -e <elasticsearch-url>:<port> --import <local-file-path>
example: kidash -g -e https://admin:admin@localhost:9200 --import ./overview.json

sirmordred fails panels task on opendistro 1.11.0

Elasticsearch and Kibana versions I'm using from opendistro which was suggested in chaoss/grimoirelab-sirmordred#491

I'm running a docker-compose setup with following images.

amazon/opendistro-for-elasticsearch:1.11.0
amazon/opendistro-for-elasticsearch-kibana:1.11.0
bitergia/mordred:grimoirelab-0.2.50

$ utils/micro.py --panels --cfg /home/bitergia/conf/setup.cfg --debug
  [2020-11-05 12:25:45,036 - root - DEBUG] - Debug mode activated
  [2020-11-05 12:25:45,036 - sirmordred.config - DEBUG] - Reading conf files
  [2020-11-05 12:25:45,036 - sirmordred.config - DEBUG] - Reading conf files: /home/bitergia/conf/setup.cfg
  [2020-11-05 12:25:45,108 - urllib3.connectionpool - DEBUG] - Starting new HTTPS connection (1): elasticsearch:443
  [2020-11-05 12:25:45,149 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET / HTTP/1.1" 200 528
  [2020-11-05 12:25:45,152 - urllib3.connectionpool - DEBUG] - Starting new HTTPS connection (1): elasticsearch:443
  [2020-11-05 12:25:45,216 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.kibana HTTP/1.1" 200 4675
  [2020-11-05 12:25:45,219 - urllib3.connectionpool - DEBUG] - Starting new HTTP connection (1): kibana:5601
  [2020-11-05 12:25:46,518 - urllib3.connectionpool - DEBUG] - http://kibana:5601 "POST /api/kibana/settings/defaultIndex HTTP/1.1" 200 183
  [2020-11-05 12:25:47,651 - urllib3.connectionpool - DEBUG] - http://kibana:5601 "POST /api/kibana/settings/timepicker:timeDefaults HTTP/1.1" 200 183
  [2020-11-05 12:25:47,652 - sirmordred.task_panels - INFO] - Kibiter settings configured!
  [2020-11-05 12:25:47,653 - sirmordred.task_panels - INFO] - Dashboard panels, visualizations: uploading...
  [2020-11-05 12:25:47,653 - kidash.kidash - DEBUG] - Reading panels JSON file: /root/grimoirelab-sirmordred/src/grimoirelab-sigils/panels/json/overview.json
  [2020-11-05 12:25:47,653 - kidash.kidash - DEBUG] - Reading panel from directory: /root/grimoirelab-sirmordred/src/grimoirelab-sigils/panels/json/overview.json
  [2020-11-05 12:25:47,657 - kidash.kidash - DEBUG] - Panel detected.
  [2020-11-05 12:25:47,657 - kidash.kidash - DEBUG] - Retrieving dashboard Overview to check release date.
  [2020-11-05 12:25:47,657 - kidash.kidash - DEBUG] - Fetching dashboard Overview
  [2020-11-05 12:25:47,659 - urllib3.connectionpool - DEBUG] - Starting new HTTPS connection (1): elasticsearch:443
  [2020-11-05 12:25:47,682 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.kibana HTTP/1.1" 200 4675
  [2020-11-05 12:25:47,695 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET / HTTP/1.1" 200 528
  [2020-11-05 12:25:47,716 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.kibana/doc/dashboard:Overview HTTP/1.1" 404 77
  [2020-11-05 12:25:47,719 - kidash.kidash - DEBUG] - Can not find type dashboard item dashboard:Overview
  [2020-11-05 12:25:47,751 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.grimoirelab-sigils HTTP/1.1" 200 474
  [2020-11-05 12:25:47,951 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.grimoirelab-sigils/_search HTTP/1.1" 200 353
  [2020-11-05 12:25:47,953 - kidash.kidash - DEBUG] - Item dashboard Overview not found in Sigils index
  [2020-11-05 12:25:47,954 - kidash.kidash - DEBUG] - Release date for current item Overview is None.
  [2020-11-05 12:25:47,954 - kidash.kidash - DEBUG] - Release date for import item Overview is 2019-05-10T07:44:15.379531
  [2020-11-05 12:25:47,966 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.kibana HTTP/1.1" 200 4675
  [2020-11-05 12:25:47,970 - urllib3.connectionpool - DEBUG] - Starting new HTTPS connection (1): elasticsearch:443
  [2020-11-05 12:25:48,014 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "GET /.kibana HTTP/1.1" 200 4675
  [2020-11-05 12:25:48,017 - kidash.kidash - DEBUG] - Cleaning dashboard from studies vis
  [2020-11-05 12:25:48,019 - kidash.kidash - DEBUG] - Cleaning dashboard for dict_keys(['git', 'github', 'community', 'github-repos'])
  [2020-11-05 12:25:48,020 - kidash.kidash - DEBUG] - Cleaning dashboard from studies vis
  [2020-11-05 12:25:48,023 - kidash.kidash - DEBUG] - Not fixing height in Kibana >= 6 versions.
  [2020-11-05 12:25:48,023 - kidash.kidash - DEBUG] - Removing `release_date` from item dashboard:Overview since not allowed, and adding it to Sigils index
  [2020-11-05 12:25:48,678 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "POST /.grimoirelab-sigils/doc/dashboard:Overview HTTP/1.1" 200 185
  [2020-11-05 12:25:48,680 - kidash.kidash - DEBUG] - Release info added to Sigils index for dashboard:Overview
  [2020-11-05 12:25:48,728 - urllib3.connectionpool - DEBUG] - https://elasticsearch:443 "POST /.kibana/doc/dashboard:Overview HTTP/1.1" 400 279
Traceback (most recent call last):
  File "utils/micro.py", line 230, in <module>
    micro_mordred(args.cfg_path, args.backend_sections,
  File "utils/micro.py", line 72, in micro_mordred
    get_panels(config)
  File "utils/micro.py", line 138, in get_panels
    task.execute()
  File "/root/grimoirelab-sirmordred/sirmordred/task_panels.py", line 443, in execute
    self.create_dashboard(panel_file, data_sources=data_sources, strict=strict_loading)
  File "/root/grimoirelab-sirmordred/sirmordred/task_panels.py", line 424, in create_dashboard
    import_dashboard(es_enrich, kibana_url, panels_path, data_sources=data_sources, strict=strict)
  File "/root/grimoirelab-sirmordred/src/grimoirelab-kidash/kidash/kidash.py", line 1306, in import_dashboard
    feed_dashboard(json_to_import, elastic_url, kibana_url, es_index, data_sources, add_vis_studies)
  File "/root/grimoirelab-sirmordred/src/grimoirelab-kidash/kidash/kidash.py", line 1466, in feed_dashboard
    import_item_json(elastic, "dashboard", dashboard['dashboard']['id'],
  File "/root/grimoirelab-sirmordred/src/grimoirelab-kidash/kidash/kidash.py", line 717, in import_item_json
    res.raise_for_status()
  File "/usr/local/lib/python3.8/site-packages/requests/models.py", line 940, in raise_for_status
    raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 400 Client Error: Bad Request for url: https://admin:admin@elasticsearch/.kibana/doc/dashboard:Overview

Making a curl request shows the following

$ curl https://admin:admin@elasticsearch/.kibana/doc/dashboard:Overview -k
{"_index":".kibana_1","_type":"doc","_id":"dashboard:Overview","found":false}

Originally posted by @marcofranssen in chaoss/grimoirelab-sirmordred#492 (comment)

Evaluate removal of dependency with Sigils

Kidash requires the installation of Sigils (https://github.com/chaoss/grimoirelab-kidash/blob/master/setup.py#L72), however this doesn't seem to be needed. The goal of this issue is to evaluate the removal of this dependency and the corresponding code.

Require DCO sign-off for new commits

This issue is to activate protobot/dco (or similar bot) to check that all commits have a sign-off in this repository.

The CHAOSS Project Charter section 8.2.1 requires that all contributions are signed-off. The CHAOSS project has been piloting the use of DCO sign-offs. Once contributors know how to do it, sign-offs are easy to do with little overhead.

For users of the git command line interface, a sign-off is accomplished with the -s as part of the commit command: git commit -s -m 'This is a commit message'

For users of the GitHub interface, a sign-off is accomplished by writing Signed-off-by: Your Name <[email protected]> into the commit comment field. This can be automated by using a browser plugin like scottrigby/dco-gh-ui

To-Do for repo maintainers: Please inform your contributors about DCO sign-offs and comment on this issue when your are ready for the DCO bot to be activated on this repository.

Define 'Path to Maintainership' and 'List Maintainers'

Per proposal in chaoss/community#5 :

The README.md of the repository contains a list of who is maintainer. Each CHAOSS repositry brings together different people and they document in the repository specific CONTRIBUTING.md how somone becomes a maintainer on their repository.

TODO:

Specify 'path to maintainership' for this repo in CONTRIBUTING.md file
List current maintainers in README.md file

Incorrect import

Hi. I'm trying to follow this tutorial but I keep getting this error:

(env) lucas@lucas-VirtualBox:~/grimoirelab$  kidash.py --elastic_url http://localhost:9200  --import chaoss_community_activity.json --debug
Traceback (most recent call last):
  File "/home/lucas/grimoirelab/env/bin/kidash.py", line 31, in <module>
    from grimoire_elk.ocean.elastic import ElasticOcean
ModuleNotFoundError: No module named 'grimoire_elk.ocean'

And I don't understand why. I have the grimoire_elk installed

kidash==0.4.21 is not published in pypi.

After #46, we need install kidash==0.4.21, but it is not published in Pypi.

Dependencies error between requests and urllib3 libraries

When installing Kidash using $ python3 setup.py install, I got the following error:

error: urllib3 1.26.5 is installed but urllib3<1.25,>=1.21.1 is required by {'requests'}

I fixed this error temporarily by updating the setup.py script with an older version of the urllib3 library, but I think these versions should be reviewed and updated to a version not causing these conflicts.

This is the piece of the setup script I modified:

install_requires=['python-dateutil',
                        'requests==2.21.0',
                        'urllib3==1.21.1'
                        ],

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